Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq11 111 2e-19 seq277 109 5e-19 seq64 98.7 1e-15 >seq11 Length=57886 Score = 111 bits (122), Expect = 2e-19 Identities = 330/494 (67%), Gaps = 15/494 (3%) Strand=Plus/Plus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646 || ||||||||||||||||| ||||||| | | |||||| || || |||| ||| Sbjct 11691 GATGCCAAGTTGCAAACGGCGGTTTCTTCTGGTGAAGTGTATTCGACGATCTCTGTACAC 11750 Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706 || || || || ||||| | |||| || || || ||| |||||| || || Sbjct 11751 AAGTTGGACGATTTGATCGTGCCTAAATTTTGTTGGTTTGACTTGCGGTTGCACGCATCC 11810 Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACAGA 154766 || |||| ||||| ||| |||| ||||||||||| | ||| | ||| || || || | Sbjct 11811 TTAAACAACATGTATGGGTTGCCAGTTTCCACTTGCGCTTCGAGAAT--AGCAAACCAAA 11868 Query 154767 -CTTC-GCGCCTCAACTTGACAAGTAAATC-GATTTTCGCTCTCATA-TTGTTCGTACAG 154822 || | | || | || ||| | | | ||||| || || || ||| | |||||| Sbjct 11869 GCTGCTGGGCATTAA-TTGTCTTCTTGCCCTTGTTTTCTCTTTCGTACTTGGT-GTACAG 11926 Query 154823 TTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACA-GCGGTCGGGACACATCA 154881 ||| || ||| || | || |||||||| || || || ||||| ||||||| Sbjct 11927 AGCTTCGAATTCTTCACCCCAGCATTCGGACAAACCCGGGCACTCGTTCGGG-CACATCA 11985 Query 154882 ATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGT 154941 || |||| | |||||| || || | |||||| |||||||| | |||||| ||| Sbjct 11986 GTGTCCACTTGCCGTTTTCTTCGACTCTTTTCATGAACAAATCGTTCGTCCACAAGCCGT 12045 Query 154942 ACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCT-TTAAATTCAAAAAA 155000 | ||||| ||||| || | ||||| | || || ||| | | |||| | | Sbjct 12046 AAAACAAGTCACGAGCTCTAGCTTCTTCCTTG-CCGTGGTTCTTTCTCAAATCGAGCCAG 12104 Query 155001 TCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTTT---T 155057 || | ||||| | |||||| || || | ||| | ||| | ||||| ||||| || Sbjct 12105 TCGAAGATGTCCGAGTGCCATGGTTCGAGATAGATGGCAAAAGCGCCCTTGCGCTTACCG 12164 Query 155058 CCTCCTTGATCCAC 155071 || ||||| ||||| Sbjct 12165 CCGCCTTGGTCCAC 12178 >seq277 Length=9178 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| ||||| | ||||||| || | ||||||||| ||||| ||||||||||| || Sbjct 8066 CCGCCTCGCAAACGCAGCACTAAGTGCAGCGTCGATTCCTTTTGGATGTTGTAATCCGCC 8125 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || ||| ||||||| | ||||| ||||| | || | |||||| ||||| || || Sbjct 8126 AACGTTCGCCCGTCTTCCAATTGCTTCCCGGCGAATATCAACCGCTGTTGGTCCGGGGGG 8185 Query 64337 ATTCCTTCTTTTTCTTGTATTTT 64359 || |||||||| ||||| || || Sbjct 8186 ATCCCTTCTTTGTCTTGGATCTT 8208 >seq64 Length=29840 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | |||||| | || | || | ||| || |||||||| ||||||||||| ||| Sbjct 4668 CCACCTCTCAATCTCAAAACCAAGTGCAACGTGGACTCTTTTTGGATGTTGTAATCCGCG 4727 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | ||||||| | || || |||||| |||| | ||||||||||| || || Sbjct 4728 AGAGTTCTCCCGTCTTCTAATTGTTTACCGGCAAAAATCAATCGCTGCTGGTCCGGCGGG 4787 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| | |||| ||||| || || | || || | || || Sbjct 4788 ATGCCCTCCTTGTCTTG-AATTTTCGCTTTCACGTTGTCGATCGTGTCCGAAGACTCGAC 4846 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTT 64428 ||| | ||| | ||| || || ||||||||||| Sbjct 4847 TTCGAGAGTGATGGTTTTCCCCGTCAAAGTTTT 4879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499631571903920