Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq11 147 3e-30 seq112 105 8e-18 seq51 102 1e-16 >seq11 Length=57886 Score = 147 bits (162), Expect = 3e-30 Identities = 559/857 (65%), Gaps = 29/857 (3%) Strand=Plus/Plus Query 116431 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 116490 ||||| || |||| || || || | ||| || || |||||| || | || || Sbjct 11685 GCGATGGATGCCAAGTTGCAAACGGCGGTTTCTTCTGGTGAAGTGTATTCGACGATCTCT 11744 Query 116491 GTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 116550 |||||||| || || || || ||||| || || | ||| |||||||| ||| ||| Sbjct 11745 GTACACAAGTTGGACGATTTGATCGTGCCTAAATTTTGTTGGTTTGACTTGCGGTTGCAC 11804 Query 116551 GCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 116610 |||||||| | | ||| ||||| | || || ||| ||| | | ||||||||| | Sbjct 11805 GCATCCTTAAACAACATGTATGGGTTGCCAGTTTCCACTTGCGCTTCGAGAATAGCAAAC 11864 Query 116611 CATACATCGGCGGCTGG-CAC-AGTGGCGTTGGCTCGCCCCTC----CTCCT-CGTACTT 116663 || | || ||||| || | | | || || |||| | ||| | ||||||| Sbjct 11865 CAAA-----GCTGCTGGGCATTAATTGTCTT--CTTGCCCTTGTTTTCTCTTTCGTACTT 11917 Query 116664 TGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCT-CTGAGAGCCCTGGTGCCTTATCTG 116722 ||||| || || || || ||||||||| |||| | | || | || || || | | Sbjct 11918 GGTGTACAGAGCTTCGAATTCTTCACCC-CAGCATTCGGACAAACCCGGGCACTCGTTCG 11976 Query 116723 GACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCC 116782 | || | || | ||| | || || || || | |||||||| | || ||| Sbjct 11977 GGCACATCAGTGTCCACTTGCCGTTTTCTTCGACTCTTTTCATGAACAAATCGTTCGTCC 12036 Query 116783 AGAGCGCCG-AGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAAC 116841 | | |||| | || | || ||| | ||||||||| | || || || | ||| Sbjct 12037 ACAA-GCCGTAAAACAAGTCACGAGCTCTAGCTTCTTCCTTGCCGTGGTTCTTTCTCAAA 12095 Query 116842 TCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTG 116901 || | |||| | ||| |||| |||||| ||||| || || | || | | |||||| Sbjct 12096 TCGAGCCAGTCGAAGATGTCCGAGTGCCATGGTTCGAGATAGATGGCAAAAGCGCCCTTG 12155 Query 116902 CGACGACCA--GCCT-GGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGA 116958 || ||| |||| ||| ||||||||||| || |||| || || |||||||| ||| Sbjct 12156 CGCTTACCGCCGCCTTGGTCCACATACCTCGCTGTGTCGTTGAACACCCGAAGCATCGGA 12215 Query 116959 ATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACG-AGACTTGTTGGCTCTGACA 117015 || ||||| | || || ||||| || | || ||||| |||| |||| | || Sbjct 12216 ATAATACCGTTCGAAGTACCGTTTGTGCCTCTGATATACGAAGAC---GTGGCACGGATG 12272 Query 117016 TCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGA 117075 ||||| ||| || ||| ||||| || || |||| || || ||||||||| | | Sbjct 12273 TCGTGAATGGACAAACCGATACCACCGGCGGACTTGGAAATGCACGCGCACTCCTTCAAC 12332 Query 117076 CTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATT 117135 || ||||||| || || || ||||| |||| | || | ||||| || | Sbjct 12333 GTGTCGTAGATACCTTCAATGGAGTCTTCCTTCATGCAAATCAAAAAGCACGAGGAGAGC 12392 Query 117136 TGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGG 117195 || || | ||||||||||||||||| | |||||| | ||| || | | | || | Sbjct 12393 TGCGGTCGAGGTGTACCAGCGTTGAACAAGGTTGGCGACGCATGCGTCATCCAACGCTCA 12452 Query 117196 GACATCTTATCGTAGGTCTCCA-AGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGA 117254 |||| | | | |||||| || | || | | || || | | ||| |||||||| || Sbjct 12453 GACAACATGTGGTAGGTTTCAATAGCCTTTTCG-ATATCCTTCTTGTGGATACCGATGGA 12511 Query 117255 GACCCGCATAAACATGT 117271 || | ||| ||||||| Sbjct 12512 TACTCTCATCAACATGT 12528 >seq112 Length=19657 Score = 105 bits (116), Expect = 8e-18 Identities = 193/281 (69%), Gaps = 4/281 (1%) Strand=Plus/Plus Query 12152 GACTTGTGCGTAATCCCCCGAGGCACCGGTCGTGATGTATTCCTTTCCATAGATGATCTC 12211 ||||||| | |||| |||||||| || || || | || ||| || |||| | ||| Sbjct 1078 GACTTGTTGGAAATCGCCCGAGGCGCCAGTGGTAACGTCTTCGGCGCCGAAGATCAACTC 1137 Query 12212 TTCCGCCGCGCGACCACCGAGAGCCACGATGATTTGTTGGGTGAGATACTCTTTCGTGTA 12271 ||| || | ||||| || | ||| || ||||| | ||| ||| | | | ||| Sbjct 1138 TTCGGCAACACGACCGCCCATAGCAACCGCCATTTGGTTCTCGAGGTACGATCTGGAGTA 1197 Query 12272 CATAGCGGATTCGG--CGTTATCCTCCGAGGGTTGGAAGAATGTCACACCACCCGCGTCC 12329 || | ||||| || | | | | ||| |||||| |||| ||||||||| | Sbjct 1198 CAATCCTGATTCTAATCGCTCTTCGCTCGGGGC--GAAGAAGGTCAAACCACCCGCAGCG 1255 Query 12330 CCTCGTGGAATGATTGAAACCTTTCGAACCGTGTCGTACCCAGGTAAAGTAGCGCCGACG 12389 |||| ||||| ||| || | || ||||| ||||| | || | ||||||||| Sbjct 1256 CCTCTTGGAACGATAGAGATTTTGGCAACCGGATCGTATTCCGGCATCAACGCGCCGACG 1315 Query 12390 ATGGCGTGCCCAGCTTCGTGATACGCCACGAGTTCCTTCTT 12430 |||||||| ||||||||||| ||||| ||||||| |||||| Sbjct 1316 ATGGCGTGGCCAGCTTCGTGGTACGCTACGAGTTTCTTCTT 1356 >seq51 Length=33875 Score = 102 bits (112), Expect = 1e-16 Identities = 192/280 (69%), Gaps = 2/280 (1%) Strand=Plus/Minus Query 175945 ACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAGTC 176004 |||||| ||||||||||| | || | | | || || ||||| | || | |||| Sbjct 7009 ACGCGTACCAAATTGACCGCTCGGGACTAACAAGTTTATGTTGTTCGTCCCAACGAAGTC 6950 Query 176005 ATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGACTT 176064 | ||| | |||||||| || |||||| || |||||||||| || ||||| || | Sbjct 6949 TTGCGCGAGATTGACAATTGTGGACGCGAGAGACGCTTCACCGTGGTGATAGGCTGAATG 6890 Query 176065 GTCCGCCACATACGCCGC-CAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGA 176123 |||| || || |||| ||| ||||| || || || || ||| | || | | || Sbjct 6889 TTCCGAGACGTA-ACCGCTCAATTGCGCAACTTTGATGTCTGACTTTAACTTTCTCTTGA 6831 Query 176124 AGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGTCGGCCATGTGTGCGATGG 176183 |||||| | |||| || |||| || ||||| |||| ||| ||| | || || | Sbjct 6830 AGCACGAAAACATAACTTTTCGTTGCGAAGGTTTGAAGCCATCGATGGCGGATGGAATCG 6771 Query 176184 AACGCTTCAAGTCTGCCAAGCTGAAATTGACCAAGTCTTT 176223 ||||| | || ||||||||| |||| || ||| ||||| Sbjct 6770 AACGCATTAAATCTGCCAAGGAGAAAAGGATCAATTCTTT 6731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613490957396880