Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq330 111 3e-19 seq329 111 3e-19 seq327 111 3e-19 seq114 111 3e-19 >seq330 Length=7938 Score = 111 bits (122), Expect = 3e-19 Identities = 283/425 (67%), Gaps = 13/425 (3%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 |||||| || ||||| |||||||| | || ||| || ||||||| | | || ||||| Sbjct 4308 CTTCTCAAAGAAGTTCGTCTTGCCTTGCAAGGAGATCAATTCCATCCAGTCAAACGGGTT 4249 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | || ||| ||||| || ||||| || ||||| || || ||| | || Sbjct 4248 CGCGGTGTTATATTCCTTCGCGAAGCCGAGCTGCGAGAGCAAGTGATCGGCAACATACTC 4189 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | |||| || ||| || || | ||| | || | ||| || | Sbjct 4188 GATGTAATCTCTCATCATGTCGGCGTTCATACCGACAAGCGCACATGGCAACGCATCGCA 4129 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCC 159888 || |||||||||||||||||| ||||||||||| ||||||| | ||| | || Sbjct 4128 CACAAACTCCTTCTCAATCTCAACCGCTTCGGTAACAATCTTTCTCAATTTTTCTTCACC 4069 Query 159889 CGGC---TTGCCCAAAAT-GTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 |||| ||| || || ||| ||| || | |||||| || || | ||||| | Sbjct 4068 CGGCGTGTTGTTTAACATAGTG-----TAA--AGCAAGCACGCGAAATCTCTGTGCAAAC 4016 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 | || || | ||||| ||||| ||||| | | | || |||||||| || || | | | Sbjct 4015 CTTCATCTCTGGAGATCAACTCATTGGAGAAGGTAAGCCCCGGCATCATGCCTCTCTTCT 3956 Query 160005 TGAGCCAAAAAATGGCCGCA-AAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAAC 160063 ||||||| | |||| ||| |||| ||| ||| ||||| || || ||| || ||| Sbjct 3955 TGAGCCAGTAGATGG-AGCAGAAAGAGCCGGAAAAGAAGATGCCTTCGACGCAGGCGAAC 3897 Query 160064 GCCAC 160068 || || Sbjct 3896 GCGAC 3892 >seq329 Length=7938 Score = 111 bits (122), Expect = 3e-19 Identities = 283/425 (67%), Gaps = 13/425 (3%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 |||||| || ||||| |||||||| | || ||| || ||||||| | | || ||||| Sbjct 4308 CTTCTCAAAGAAGTTCGTCTTGCCTTGCAAGGAGATCAATTCCATCCAGTCAAACGGGTT 4249 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | || ||| ||||| || ||||| || ||||| || || ||| | || Sbjct 4248 CGCGGTGTTATATTCCTTCGCGAAGCCGAGCTGCGAGAGCAAGTGATCGGCAACATACTC 4189 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | |||| || ||| || || | ||| | || | ||| || | Sbjct 4188 GATGTAATCTCTCATCATGTCGGCGTTCATACCGACAAGCGCACATGGCAACGCATCGCA 4129 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCC 159888 || |||||||||||||||||| ||||||||||| ||||||| | ||| | || Sbjct 4128 CACAAACTCCTTCTCAATCTCAACCGCTTCGGTAACAATCTTTCTCAATTTTTCTTCACC 4069 Query 159889 CGGC---TTGCCCAAAAT-GTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 |||| ||| || || ||| ||| || | |||||| || || | ||||| | Sbjct 4068 CGGCGTGTTGTTTAACATAGTG-----TAA--AGCAAGCACGCGAAATCTCTGTGCAAAC 4016 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 | || || | ||||| ||||| ||||| | | | || |||||||| || || | | | Sbjct 4015 CTTCATCTCTGGAGATCAACTCATTGGAGAAGGTAAGCCCCGGCATCATGCCTCTCTTCT 3956 Query 160005 TGAGCCAAAAAATGGCCGCA-AAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAAC 160063 ||||||| | |||| ||| |||| ||| ||| ||||| || || ||| || ||| Sbjct 3955 TGAGCCAGTAGATGG-AGCAGAAAGAGCCGGAAAAGAAGATGCCTTCGACGCAGGCGAAC 3897 Query 160064 GCCAC 160068 || || Sbjct 3896 GCGAC 3892 >seq327 Length=7986 Score = 111 bits (122), Expect = 3e-19 Identities = 283/425 (67%), Gaps = 13/425 (3%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 |||||| || ||||| |||||||| | || ||| || ||||||| | | || ||||| Sbjct 3679 CTTCTCAAAGAAGTTCGTCTTGCCTTGCAAGGAGATCAATTCCATCCAGTCAAACGGGTT 3738 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | || ||| ||||| || ||||| || ||||| || || ||| | || Sbjct 3739 CGCGGTGTTATATTCCTTCGCGAAGCCGAGCTGCGAGAGCAAGTGATCGGCAACATACTC 3798 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | |||| || ||| || || | ||| | || | ||| || | Sbjct 3799 GATGTAATCTCTCATCATGTCGGCGTTCATACCGACAAGCGCACATGGCAACGCATCGCA 3858 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCC 159888 || |||||||||||||||||| ||||||||||| ||||||| | ||| | || Sbjct 3859 CACAAACTCCTTCTCAATCTCAACCGCTTCGGTAACAATCTTTCTCAATTTTTCTTCACC 3918 Query 159889 CGGC---TTGCCCAAAAT-GTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 |||| ||| || || ||| ||| || | |||||| || || | ||||| | Sbjct 3919 CGGCGTGTTGTTTAACATAGTG-----TAA--AGCAAGCACGCGAAATCTCTGTGCAAAC 3971 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 | || || | ||||| ||||| ||||| | | | || |||||||| || || | | | Sbjct 3972 CTTCATCTCTGGAGATCAACTCATTGGAGAAGGTAAGCCCCGGCATCATGCCTCTCTTCT 4031 Query 160005 TGAGCCAAAAAATGGCCGCA-AAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAAC 160063 ||||||| | |||| ||| |||| ||| ||| ||||| || || ||| || ||| Sbjct 4032 TGAGCCAGTAGATGG-AGCAGAAAGAGCCGGAAAAGAAGATGCCTTCGACGCAGGCGAAC 4090 Query 160064 GCCAC 160068 || || Sbjct 4091 GCGAC 4095 >seq114 Length=19556 Score = 111 bits (122), Expect = 3e-19 Identities = 283/425 (67%), Gaps = 13/425 (3%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 |||||| || ||||| |||||||| | || ||| || ||||||| | | || ||||| Sbjct 4308 CTTCTCAAAGAAGTTCGTCTTGCCTTGCAAGGAGATCAATTCCATCCAGTCAAACGGGTT 4249 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | || ||| ||||| || ||||| || ||||| || || ||| | || Sbjct 4248 CGCGGTGTTATATTCCTTCGCGAAGCCGAGCTGCGAGAGCAAGTGATCGGCAACATACTC 4189 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | |||| || ||| || || | ||| | || | ||| || | Sbjct 4188 GATGTAATCTCTCATCATGTCGGCGTTCATACCGACAAGCGCACATGGCAACGCATCGCA 4129 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCC 159888 || |||||||||||||||||| ||||||||||| ||||||| | ||| | || Sbjct 4128 CACAAACTCCTTCTCAATCTCAACCGCTTCGGTAACAATCTTTCTCAATTTTTCTTCACC 4069 Query 159889 CGGC---TTGCCCAAAAT-GTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 |||| ||| || || ||| ||| || | |||||| || || | ||||| | Sbjct 4068 CGGCGTGTTGTTTAACATAGTG-----TAA--AGCAAGCACGCGAAATCTCTGTGCAAAC 4016 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 | || || | ||||| ||||| ||||| | | | || |||||||| || || | | | Sbjct 4015 CTTCATCTCTGGAGATCAACTCATTGGAGAAGGTAAGCCCCGGCATCATGCCTCTCTTCT 3956 Query 160005 TGAGCCAAAAAATGGCCGCA-AAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAAC 160063 ||||||| | |||| ||| |||| ||| ||| ||||| || || ||| || ||| Sbjct 3955 TGAGCCAGTAGATGG-AGCAGAAAGAGCCGGAAAAGAAGATGCCTTCGACGCAGGCGAAC 3897 Query 160064 GCCAC 160068 || || Sbjct 3896 GCGAC 3892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795134148266080