Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq120 187 1e-41 seq64 100 1e-15 seq277 89.7 2e-12 >seq120 Length=18829 Score = 187 bits (206), Expect = 1e-41 Identities = 405/601 (67%), Gaps = 9/601 (1%) Strand=Plus/Plus Query 451880 AGTAAAGATAAAATTGATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATT 451939 || |||| | |||| ||||||||||| | || || || || ||| | || |||||| || Sbjct 9697 AGAAAAG-TCAAATCGATGAAATTGTTTTAGTCGGTGGCTCAACAAGGATCCCTAAAGTT 9755 Query 451940 CAAGATATGTTGTCTTCTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGAT 451999 || || | || ||| || | || || ||| | || | || ||||| ||| Sbjct 9756 CAGGAACTTTTAAAAGATTACTTCGATGGCAAGGAACCGAGCAAAGGTGTGAATCCAGAT 9815 Query 452000 GAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGATGA- 452058 |||||||||||||||||||| || || |||| | || || | || || | || Sbjct 9816 GAAGCTGTTGCATATGGTGCGGCTGTCCAAGGTGGGATCTTATCTGGCGAAGGGGGAGAT 9875 Query 452059 -AAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAG 452117 ||| |||| ||| || | | || ||| ||||| || | | || ||||||||| Sbjct 9876 GAAACGAAGGACATA--CTTCTCCTTGACGTAGCACCTTTAACACAAGGTATTGAAACAG 9933 Query 452118 CTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTC 452177 |||||| | ||||| || || || |||| ||| || || |||||| || Sbjct 9934 TTGGTGGGGTCATGACGAAATTGATCCCACGAAATACTGTGATACCAACAAAAAAGTCTC 9993 Query 452178 AAACATTTAGTAC--AGCAAGTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGG 452235 |||| || | || | |||| |||| || | | ||||| || || || ||||| || Sbjct 9994 AAACTTTCACAACGTATCAAG--ATAATCAGCAAACTGTAATGATACAGGTTTTTGAGGG 10051 Query 452236 AGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAACATTCC 452295 ||| | || ||||| |||||| | ||| || ||||| || || ||||| Sbjct 10052 TGAAAGAGCCATGACGAAGGATAATCACTTACTGGGCAAATTTGAACTCACATCGATTCC 10111 Query 452296 TCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTAT 452355 |||| |||||||| ||||||||||| |||| | ||| |||||||||| || || Sbjct 10112 TCCTGCACCAAGGGGTGTGCCTCAAATTGAGGTTACGTTTGAAATTGATGCAAACGGGAT 10171 Query 452356 TCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAAAAAATTACAATTACTAA 452415 ||| || || |||| | || ||| | |||| |||||||| |||||||| || || || Sbjct 10172 TCTAAACGTTGGTGCGGAAGATAAAGGAACTGGTAAATCAGAGAAAATTACGATAACAAA 10231 Query 452416 TGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATT 452475 |||||| | | ||| | ||||| |||||| ||||| || ||||| ||| |||| Sbjct 10232 CGATAAAGGGAGACTTTCTCAGGAAGAAATTGAACGTATGGTCGAAGAAGCTGAAGAATT 10291 Query 452476 C 452476 | Sbjct 10292 C 10292 Score = 105 bits (116), Expect = 3e-17 Identities = 182/260 (70%), Gaps = 12/260 (5%) Strand=Plus/Plus Query 451340 GCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGC-AGGACATATTGCTGGTTT 451398 || ||||||||||||||||| || |||||||| || ||||| ||||| ||||| || | Sbjct 9113 GCATATTTCAATGATGCACAGCGTCAAGCAACAAAGGATGCTGGGACA-ATTGCAGGACT 9171 Query 451399 AAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAA 451458 || || | ||||||| || || ||||| || || || | || ||||| || Sbjct 9172 CAACGTCGCTAGAATTATCAACGAGCCTACTGCGGCCGCCATTGCCTATGGTCT------ 9225 Query 451459 ATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGA 451518 | | ||||| || || || |||||| | || |||||| | |||||||| || || Sbjct 9226 -TGATAAGAA--AGGCGAGAAGAATATTCTTGTTTTTGATCTCGGTGGAGGCACGTTCGA 9282 Query 451519 TACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATAC 451578 | ||| | | | ||||| | || || |||||||| | |||| ||||| ||||| Sbjct 9283 TGTTTCCATTTTAACTATTGATAACGGTGTGTTTGAAGTTATTTCAACAAATGGAGATAC 9342 Query 451579 TCATCTAGGAGGTGAAGATA 451598 || || || ||| |||||| Sbjct 9343 GCACCTCGGTGGT-AAGATA 9361 >seq64 Length=29840 Score = 100 bits (110), Expect = 1e-15 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 391064 TAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGC 391123 |||||| |||| || ||||| || ||||| || || || || || || | || || Sbjct 4880 TAAAACTTTGACGGGGAAAACCATCACTCTCGAAGTCGAGTCTTCGGACACGATCGACAA 4821 Query 391124 TATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTT 391183 | ||| ||||||||||| ||||| || || || || || || || || || ||||| Sbjct 4820 CGTGAAAGCGAAAATTCAAGACAAGGAGGGCATCCCGCCGGACCAGCAGCGATTGATTTT 4761 Query 391184 CTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGC 391243 | || |||||| | ||||| || |||||| | |||||||| || || | || || | Sbjct 4760 TGCCGGTAAACAATTAGAAGACGGGAGAACTCTCGCGGATTACAACATCCAAAAAGAGTC 4701 Query 391244 AACACTTCACTTAGTATTAAGACTGAGAGG 391273 || | ||||| || || ||| ||||||| Sbjct 4700 CACGTTGCACTTGGTTTTGAGATTGAGAGG 4671 >seq277 Length=9178 Score = 89.7 bits (98), Expect = 2e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 391065 AAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCT 391124 ||| || ||||||| ||||| || || | || || || || || |||| || || Sbjct 8277 AAATCAGTGACTGGCAAAACGATAACGTTGGAGGTGGAGTCTTCCGATACGATCGATAAC 8218 Query 391125 ATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTC 391184 | || || || ||||| || ||||| || || || || ||||| || || || ||| Sbjct 8217 GTCAAGGCGAAGATCCAAGACAAAGAAGGGATCCCCCCGGACCAACAGCGGTTGATATTC 8158 Query 391185 TCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCA 391244 | ||||| ||| | ||||| || |||| ||||||||||| || || | ||||| | Sbjct 8157 GCCGGGAAGCAATTGGAAGACGGGCGAACGTTGGCGGATTACAACATCCAAAAGGAATCG 8098 Query 391245 ACACTTCACTTAGT 391258 || || |||||||| Sbjct 8097 ACGCTGCACTTAGT 8084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975664785176744