Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq120 125 5e-23 >seq120 Length=18829 Score = 125 bits (138), Expect = 5e-23 Identities = 125/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 518500 TCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATA 518559 ||||||||| |||| ||| || || ||||| || ||||||||| | ||||||| Sbjct 8792 TCTACCAATCAATCTTTTAGCGTCGAAAATGGTTCGTGTTGGATTAGAGGTGGCTTGATT 8733 Query 518560 TTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGT 518619 ||| || |||||||| |||||| |||| | || ||||||| ||| || |||||||| | Sbjct 8732 TTTCGCAGCATCTCCGATCAGACGTTCATTATCCGTAAATGCAACGTAAGATGGAGTAAT 8673 Query 518620 GCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATT 518661 | ||| ||||| ||||| || || ||||||||||| ||||| Sbjct 8672 CCTATTGCCTTGGTCATTTGCGATTATTTCAACTTTCCCATT 8631 Score = 125 bits (138), Expect = 5e-23 Identities = 392/600 (65%), Gaps = 28/600 (5%) Strand=Plus/Minus Query 517148 TCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCG 517207 ||| | ||||||| ||||||| | ||| | ||||||| || | ||| | ||| || Sbjct 10297 TCTGCGAATTCTTCAGCTTCTTCGACCATACGTTCAATTTCTTCCTGAGAAAGTCTCCCT 10238 Query 517208 CGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACA 517267 || || || || ||||| |||| ||||| ||| |||||| | ||| || Sbjct 10237 TTATCGTTTGTTATCGTAATTTTCTCTGATTTACCAGTTCCTTTATCTTCCGCACCAACG 10178 Query 517268 TTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGA 517327 || ||||| || || ||||| | ||||| || || ||||||||||| || || || | Sbjct 10177 TTTAGAATCCCGTTTGCATCAATTTCAAACGTAACCTCAATTTGAGGCACACCCCTTGGT 10118 Query 517328 GCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTT 517387 ||||| || ||| | | | |||| | ||||| | |||||| || || | | Sbjct 10117 GCAGGAGGAATCGATGTGAGTTCAAATTTGCCCAGTAAGTGATTATCCTTCGTCATGGCT 10058 Query 517388 CGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT---TGATTATCTGAATAAGTTGTA 517444 | ||||||||| |||| || | | | ||||||| ||||||||| ||| ||||| Sbjct 10057 CTTTCACCCTCAAAAACCTGTA---TCATTACAGTTTGCTGATTATCTTGATACGTTGTG 10001 Query 517445 AATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTC----TATCAATAATATTGGTCA 517499 || | | || || ||||| || || || |||| |||||| || |||| Sbjct 10000 AA-AGTTTGAGACTTTTTTGTTGGTATCACAGTATTTCGTGGGATCAAT----TTCGTCA 9946 Query 517500 TAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT 517559 | | ||||| ||||||| | ||| | | | ||| | || |||| || | || | Sbjct 9945 TGACCCCACCAACTGTTTCAATACCTTGTGTTAAAGGTGCTACGTCAAGGAGAAGTATGT 9886 Query 517560 --TTTGAAGTTTTTCAT----CAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCAC 517613 || | |||||| | || | | | ||| || | |||| | ||| |||| Sbjct 9885 CCTTCG-----TTTCATCTCCCCCTTCGCCAGATAAG-ATCCCACCTTGGACAGCCGCAC 9832 Query 517614 CATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT 517673 ||||||||||||||||||| ||||| ||| || | ||| || |||| ||| ||| Sbjct 9831 CATATGCAACAGCTTCATCTGGATTCACACCTTTGCTCGGTTCCTTGCCATCGAAGTAAT 9772 Query 517674 TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 517733 | | ||||| || ||||| || | | ||| || || ||||| |||||||||| Sbjct 9771 CTTTTAAAAGTTCCTGAACTTTAGGGATCCTTGTTGAGCCACCGACTAAAACAATTTCAT 9712 Score = 96.9 bits (106), Expect = 3e-14 Identities = 124/170 (73%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 518117 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 518176 || || ||||| | |||||||| ||| | |||| | || | ||| | ||||||||| Sbjct 9276 GTGCCTCCACCGAGATCAAAAACAAGAATATTCTTCTC---GCCTT---TCTTATCAAGA 9223 Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| |||| || || ||||| || || || |||||||| || || || || ||| Sbjct 9222 CCATAGGCAATGGCGGCCGCAGTAGGCTCGTTGATAATTCTAGCGACGTTGAGTCCTGCA 9163 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 518286 ||| | || ||||| || || ||||| | |||| ||| || |||||||| Sbjct 9162 ATTGTCCCAGCATCCTTTGTTGCTTGACGCTGTGCATCATTGAAATATGC 9113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780717297863308