Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq11 168 8e-37 seq330 102 1e-16 seq329 102 1e-16 seq327 102 1e-16 seq114 102 1e-16 seq112 91.5 2e-13 >seq11 Length=57886 Score = 168 bits (186), Expect = 8e-37 Identities = 585/904 (65%), Gaps = 19/904 (2%) Strand=Plus/Plus Query 110329 GTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGA 110388 |||||||| | || || |||||||||||||| || || || || || | || Sbjct 11727 GTGTATTCGACGATCTCTGTACACAAGTTGGACGATTTGATCGTGCCTAAATTTTGTTGG 11786 Query 110389 TTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGT 110448 || || ||| |||||| ||||||||| | | |||||||||| | ||||||||| || Sbjct 11787 TTTGACTTGCGGTTGCACGCATCCTTAAACAACATGTATGGGTTGCCAGTTTCCACTTGC 11846 Query 110449 GACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGAC--AGTTGCGTTAGCGAGACCTT 110506 | | |||||| || ||| | || || ||| | ||| || | | |||| Sbjct 11847 GCTTCGAGAATAGCAAACCAAA-----GCTGCTGGGCATTAATTGTCTT--CTTGCCCTT 11899 Query 110507 C----CTCCT-CGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAG 110561 ||| | ||||||||||||||| | || ||||| | || | || || | Sbjct 11900 GTTTTCTCTTTCGTACTTGGTGTACAGAGCTTCGAATTCTTCACCCCAGCATTCGGACAA 11959 Query 110562 ACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCAT 110621 |||| || || || || | || | ||| || || || || || || ||||| Sbjct 11960 ACCCGGGCACTCGTTCGGGCACATCAGTGTCCACTTGCCGTTTTCTTCGACTCTTTTCAT 12019 Query 110622 GAACAGGTCAGGAATCCACATCGCCGAGAAA-AGGTCACGGCAACGAGCCTCTTCATCAC 110680 ||||| || |||||| |||| ||| | |||||| | ||| ||||| | | Sbjct 12020 GAACAAATCGTTCGTCCACAA-GCCGTAAAACAAGTCACGAGCTCTAGCTTCTTCCTTGC 12078 Query 110681 CTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGA 110740 | ||||| | | || | |||| | ||| ||||||||||||||||||||||||| Sbjct 12079 CGTGGTTCTTTCTCAAATCGAGCCAGTCGAAGATGTCCGAGTGCCATGGTTCGAGATAGA 12138 Query 110741 CAGCGATGGATCCCTTACGACGAC--CCGCC-TGGTTAACATAGCGTGCTGTGGCATTGA 110797 || | | ||||| || || ||||| |||| ||||| | |||||| | |||| Sbjct 12139 TGGCAAAAGCGCCCTTGCGCTTACCGCCGCCTTGGTCCACATACCTCGCTGTGTCGTTGA 12198 Query 110798 AGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACT 110857 | |||| ||||| |||||||| || | || ||| ||||| || || || || Sbjct 12199 ACACCCGAAGCATCGGAATAATACCGTTCGAAGTACCGTTTGTGCCTCTGATATACGAAG 12258 Query 110858 TATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTG 110917 ||||||| |||||||| || || ||| |||||||| || |||| ||| | Sbjct 12259 ACGTGGCACGGATGTCGTGAATGGACAAACCGATACCACCGGCGGACTTGGAAATGCACG 12318 Query 110918 CACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAA 110977 | ||||| | | || | || ||||| ||||| || ||| |||| || ||| | || Sbjct 12319 CGCACTCCTTCAACGTGTCGTAGATACCTTCAATGGAGTCTTCCTTCATGCAAATCAAAA 12378 Query 110978 AGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAA 111037 |||| || || | ||| || ||||| || || || ||||| | || || | |||||| Sbjct 12379 AGCACGAGGAGAGCTGCGGTCGAGGTGTACCAGCGTTGAACAAGGTTGGCGACGCATGCG 12438 Query 111038 TGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGT 111097 | | | || | |||| | ||| ||| || || | || | ||| || || Sbjct 12439 TCATCCAACGCTCAGACAACATGTGGTAGGTTTCAATAGCCTTTTCGATATCCTTCTTGT 12498 Query 111098 GAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAA 111157 | ||||| |||| |||| ||| ||||| | || || |||| | ||| || || | Sbjct 12499 GGATACCGATGGATACTCTCATCAACATGTGCTGTGGACGCTCGACAACCTTACCGTCTA 12558 Query 111158 CACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCAC 111217 ||| | ||| || | || |||| ||||||||| || |||| || |||| Sbjct 12559 TGCGCAACAAGTATGAGCGTTCCAAAGTTTTGAAACCAAAGTAGTCATAATCAAAGTCAC 12618 Query 111218 GATC 111221 | || Sbjct 12619 GGTC 12622 >seq330 Length=7938 Score = 102 bits (112), Expect = 1e-16 Identities = 300/454 (66%), Gaps = 10/454 (2%) Strand=Plus/Minus Query 119207 ATAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCAT 119266 ||| ||||| || | ||| || ||||| |||||||| || | | ||||| |||||| Sbjct 4323 ATATTCACCGACACGCTTCTCAAAGAAGTTCGTCTTGCCTTGCAAGGAGATCAATTCCAT 4264 Query 119267 AAAGTCAAAAGGATTTTTGGAGTTCCAGATTGGTGGTTGA--CCAACTTGTTTCAGAAGA 119324 ||||||| || || || ||| | ||| | || || | || || | Sbjct 4263 CCAGTCAAACGGGTTCGCGGTGTT--ATATTCCTTCGCGAAGCCGAGCTGCGAGAGCAAG 4206 Query 119325 CGATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTA 119384 |||||| ||||||||||| || || |||| | || | |||||||| | || | Sbjct 4205 TGATCGGCAACATACTCGATGTAATCTCTCATCATGTCGGCGTTCATACCGACAAGCGCA 4146 Query 119385 CACGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAG 119444 || || | |||||| | || | |||||| ||||| || ||||| | || || Sbjct 4145 CATGGCAACGCATCGCACACAAACTCCTTCTCAATCTCAACCGCTTCGGTAACAATCTTT 4086 Query 119445 -TGAATAGTT--TCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACGGCAAAT 119501 | ||| || || || | |||||| || ||| |||| | | ||| |||| Sbjct 4085 CTCAATTTTTCTTCACCCGGCGTGTTGTTTAACAT-AGTGTAAAGCAAGC-ACGCGAAAT 4028 Query 119502 TCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATG 119561 || || | |||||||| | ||||| | |||||| |||| ||| || ||||| Sbjct 4027 CTCTG-TGCAAACCTTCATCTCTGGAGATCAACTCATTGGAGAAGGTAAGCCCCGGCATC 3969 Query 119562 AGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCC 119621 | ||||| ||||| ||||| |||||| || ||| || |||||||||||||| || Sbjct 3968 ATGCCTCTCTTCTTGAGCCAGTAGATGGAGCAGAAAGAGCCGGAAAAGAAGATGCCTTCG 3909 Query 119622 ACACAGGCGAAAGCGAATAGACGCTCAGCAAAAG 119655 || |||||||| |||| | ||| || || |||| Sbjct 3908 ACGCAGGCGAACGCGACCAAACGTTCGGCGAAAG 3875 >seq329 Length=7938 Score = 102 bits (112), Expect = 1e-16 Identities = 300/454 (66%), Gaps = 10/454 (2%) Strand=Plus/Minus Query 119207 ATAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCAT 119266 ||| ||||| || | ||| || ||||| |||||||| || | | ||||| |||||| Sbjct 4323 ATATTCACCGACACGCTTCTCAAAGAAGTTCGTCTTGCCTTGCAAGGAGATCAATTCCAT 4264 Query 119267 AAAGTCAAAAGGATTTTTGGAGTTCCAGATTGGTGGTTGA--CCAACTTGTTTCAGAAGA 119324 ||||||| || || || ||| | ||| | || || | || || | Sbjct 4263 CCAGTCAAACGGGTTCGCGGTGTT--ATATTCCTTCGCGAAGCCGAGCTGCGAGAGCAAG 4206 Query 119325 CGATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTA 119384 |||||| ||||||||||| || || |||| | || | |||||||| | || | Sbjct 4205 TGATCGGCAACATACTCGATGTAATCTCTCATCATGTCGGCGTTCATACCGACAAGCGCA 4146 Query 119385 CACGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAG 119444 || || | |||||| | || | |||||| ||||| || ||||| | || || Sbjct 4145 CATGGCAACGCATCGCACACAAACTCCTTCTCAATCTCAACCGCTTCGGTAACAATCTTT 4086 Query 119445 -TGAATAGTT--TCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACGGCAAAT 119501 | ||| || || || | |||||| || ||| |||| | | ||| |||| Sbjct 4085 CTCAATTTTTCTTCACCCGGCGTGTTGTTTAACAT-AGTGTAAAGCAAGC-ACGCGAAAT 4028 Query 119502 TCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATG 119561 || || | |||||||| | ||||| | |||||| |||| ||| || ||||| Sbjct 4027 CTCTG-TGCAAACCTTCATCTCTGGAGATCAACTCATTGGAGAAGGTAAGCCCCGGCATC 3969 Query 119562 AGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCC 119621 | ||||| ||||| ||||| |||||| || ||| || |||||||||||||| || Sbjct 3968 ATGCCTCTCTTCTTGAGCCAGTAGATGGAGCAGAAAGAGCCGGAAAAGAAGATGCCTTCG 3909 Query 119622 ACACAGGCGAAAGCGAATAGACGCTCAGCAAAAG 119655 || |||||||| |||| | ||| || || |||| Sbjct 3908 ACGCAGGCGAACGCGACCAAACGTTCGGCGAAAG 3875 >seq327 Length=7986 Score = 102 bits (112), Expect = 1e-16 Identities = 300/454 (66%), Gaps = 10/454 (2%) Strand=Plus/Plus Query 119207 ATAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCAT 119266 ||| ||||| || | ||| || ||||| |||||||| || | | ||||| |||||| Sbjct 3664 ATATTCACCGACACGCTTCTCAAAGAAGTTCGTCTTGCCTTGCAAGGAGATCAATTCCAT 3723 Query 119267 AAAGTCAAAAGGATTTTTGGAGTTCCAGATTGGTGGTTGA--CCAACTTGTTTCAGAAGA 119324 ||||||| || || || ||| | ||| | || || | || || | Sbjct 3724 CCAGTCAAACGGGTTCGCGGTGTT--ATATTCCTTCGCGAAGCCGAGCTGCGAGAGCAAG 3781 Query 119325 CGATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTA 119384 |||||| ||||||||||| || || |||| | || | |||||||| | || | Sbjct 3782 TGATCGGCAACATACTCGATGTAATCTCTCATCATGTCGGCGTTCATACCGACAAGCGCA 3841 Query 119385 CACGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAG 119444 || || | |||||| | || | |||||| ||||| || ||||| | || || Sbjct 3842 CATGGCAACGCATCGCACACAAACTCCTTCTCAATCTCAACCGCTTCGGTAACAATCTTT 3901 Query 119445 -TGAATAGTT--TCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACGGCAAAT 119501 | ||| || || || | |||||| || ||| |||| | | ||| |||| Sbjct 3902 CTCAATTTTTCTTCACCCGGCGTGTTGTTTAACAT-AGTGTAAAGCAAGC-ACGCGAAAT 3959 Query 119502 TCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATG 119561 || || | |||||||| | ||||| | |||||| |||| ||| || ||||| Sbjct 3960 CTCTG-TGCAAACCTTCATCTCTGGAGATCAACTCATTGGAGAAGGTAAGCCCCGGCATC 4018 Query 119562 AGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCC 119621 | ||||| ||||| ||||| |||||| || ||| || |||||||||||||| || Sbjct 4019 ATGCCTCTCTTCTTGAGCCAGTAGATGGAGCAGAAAGAGCCGGAAAAGAAGATGCCTTCG 4078 Query 119622 ACACAGGCGAAAGCGAATAGACGCTCAGCAAAAG 119655 || |||||||| |||| | ||| || || |||| Sbjct 4079 ACGCAGGCGAACGCGACCAAACGTTCGGCGAAAG 4112 >seq114 Length=19556 Score = 102 bits (112), Expect = 1e-16 Identities = 300/454 (66%), Gaps = 10/454 (2%) Strand=Plus/Minus Query 119207 ATAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCAT 119266 ||| ||||| || | ||| || ||||| |||||||| || | | ||||| |||||| Sbjct 4323 ATATTCACCGACACGCTTCTCAAAGAAGTTCGTCTTGCCTTGCAAGGAGATCAATTCCAT 4264 Query 119267 AAAGTCAAAAGGATTTTTGGAGTTCCAGATTGGTGGTTGA--CCAACTTGTTTCAGAAGA 119324 ||||||| || || || ||| | ||| | || || | || || | Sbjct 4263 CCAGTCAAACGGGTTCGCGGTGTT--ATATTCCTTCGCGAAGCCGAGCTGCGAGAGCAAG 4206 Query 119325 CGATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTA 119384 |||||| ||||||||||| || || |||| | || | |||||||| | || | Sbjct 4205 TGATCGGCAACATACTCGATGTAATCTCTCATCATGTCGGCGTTCATACCGACAAGCGCA 4146 Query 119385 CACGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAG 119444 || || | |||||| | || | |||||| ||||| || ||||| | || || Sbjct 4145 CATGGCAACGCATCGCACACAAACTCCTTCTCAATCTCAACCGCTTCGGTAACAATCTTT 4086 Query 119445 -TGAATAGTT--TCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACGGCAAAT 119501 | ||| || || || | |||||| || ||| |||| | | ||| |||| Sbjct 4085 CTCAATTTTTCTTCACCCGGCGTGTTGTTTAACAT-AGTGTAAAGCAAGC-ACGCGAAAT 4028 Query 119502 TCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATG 119561 || || | |||||||| | ||||| | |||||| |||| ||| || ||||| Sbjct 4027 CTCTG-TGCAAACCTTCATCTCTGGAGATCAACTCATTGGAGAAGGTAAGCCCCGGCATC 3969 Query 119562 AGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCC 119621 | ||||| ||||| ||||| |||||| || ||| || |||||||||||||| || Sbjct 3968 ATGCCTCTCTTCTTGAGCCAGTAGATGGAGCAGAAAGAGCCGGAAAAGAAGATGCCTTCG 3909 Query 119622 ACACAGGCGAAAGCGAATAGACGCTCAGCAAAAG 119655 || |||||||| |||| | ||| || || |||| Sbjct 3908 ACGCAGGCGAACGCGACCAAACGTTCGGCGAAAG 3875 >seq112 Length=19657 Score = 91.5 bits (100), Expect = 2e-13 Identities = 197/291 (68%), Gaps = 14/291 (5%) Strand=Plus/Plus Query 11590 TCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTT---G 11646 |||||||| |||||||| ||||| | |||||||||||| ||||| | ||| ||||| | Sbjct 1718 TCGAAACCATCCATTTCAGTGAGCAACTGGTTGATCGTTTGTTCTCTCTCGTCGTTCCCG 1777 Query 11647 GAGGGCATACC---ACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAAT 11703 | |||||| ||| ||||| | ||||| || ||||||||||||||||| Sbjct 1778 CCGCCCATACCGGAACC------ACGCTGCCGCCCGACGGCATCAATCTCATCGATGAAG 1831 Query 11704 ACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCA 11763 || || |||||| || | || | ||| || | || | || || || ||| Sbjct 1832 ACAATGCACGGTGCCTTCGATTTCGCTTTTTCAAACAAGTCTCTGACGCGAGAGGCGCCA 1891 Query 11764 ACACCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGAC 11823 || || ||||||| |||||||| | | |||| || | ||| || ||| | Sbjct 1892 ACGCCGACGAACAATTCAACGAACTCGGACGCAGCGCAGGAGAAGAACGGCACACCCGCT 1951 Query 11824 TCACCAGCGA-TGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACC 11873 ||||| || | || || | || | | ||||||||| ||||| || | ||| Sbjct 1952 TCACCCGCAACTGCCTTG-GCCAATAAAGTCTTACCAGTACCCGGCGGACC 2001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588960406860400