Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq11 197 2e-45 seq512 132 6e-26 seq6 102 1e-16 seq51 95.1 1e-14 seq112 84.2 3e-11 >seq11 Length=57886 Score = 197 bits (218), Expect = 2e-45 Identities = 578/879 (66%), Gaps = 21/879 (2%) Strand=Plus/Plus Query 106437 TCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCAT 106496 ||| ||| ||||| | ||| | ||||| |||||||| |||||||| || || || | Sbjct 11659 TCTTTTCGATGACAAATCGTGGCAAAGCGATGGATGCCAAGTTGCAAACGGCGGTTTCTT 11718 Query 106497 CCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAAT 106556 | ||||| || | || ||||||||||||||||| || ||||| || |||| Sbjct 11719 CTGGTGAAGTGTATTCGACGATCTCTGTACACAAGTTGGACGATTTGATCGTGCCTAAAT 11778 Query 106557 TCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCT 106616 | | |||||| ||| ||||||||||||||| | | |||||| || | || || | Sbjct 11779 TTTGTTGGTTTGACTTGCGGTTGCACGCATCCTTAAACAACATGTATGGGTTGCCAGTTT 11838 Query 106617 CCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCGGCTGG---TACAATGGCGT-TG 106672 || || | | |||||| || ||| | || ||||| | | || | | | Sbjct 11839 CCACTTGCGCTTCGAGAATAGCAAACCAAA-----GCTGCTGGGCATTAATTGTCTTCTT 11893 Query 106673 GCCCGTCCCTCCGCCT-CGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGT- 106730 |||| | | | | | ||||||| ||||| || ||||| || || |||||| | || | Sbjct 11894 GCCCTTGTTTTCTCTTTCGTACTTGGTGTACAGAGCTTCGAATTCTTCACCC-CAGCATT 11952 Query 106731 CGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCC 106790 |||| | ||| || || || || || | || | ||| | || || || || | Sbjct 11953 CGGACAAACCCGGGCACTCGTTCGGGCACATCAGTGTCCACTTGCCGTTTTCTTCGACTC 12012 Query 106791 GCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTT 106850 |||||||| | || |||||| | |||| | || | | | ||| |||| Sbjct 12013 TTTTCATGAACAAATCGTTCGTCCACAAGCCGTAAAACAAGTCACGAGCTCTAGCTTCTT 12072 Query 106851 CGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAA 106910 | | || ||||| || || || || | || | ||| |||| ||||||||| || | Sbjct 12073 CCTTGCCGTGGTTCTTTCTCAAATCGAGCCAGTCGAAGATGTCCGAGTGCCATGGTTCGA 12132 Query 106911 GATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGG 106967 |||||| || | || ||||| || || || |||| | ||||| | ||||||| Sbjct 12133 GATAGATGGCAAAAGCGCCCTTGCGCTTACCGCCGCCTTGGTCCACATACCTCGCTGTGT 12192 Query 106968 CGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCC-GA-AT 107025 |||| || || |||||||| ||||||||||| | || ||| ||||| || | || || Sbjct 12193 CGTTGAACACCCGAAGCATCGGAATAATACCGTTCGAAGTACCGTTTGTGCCTCTGATAT 12252 Query 107026 ACGA-GATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTG 107084 |||| || | ||| | | || || ||| || || ||||| || || |||| | Sbjct 12253 ACGAAGACGT---GGCACGGATGTCGTGAATGGACAAACCGATACCACCGGCGGACTTGG 12309 Query 107085 AGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGG 107144 | || ||| |||||| | | || | |||||||| | || ||||| ||||| || Sbjct 12310 AAATGCACGCGCACTCCTTCAACGTGTCGTAGATACCTTCAATGGAGTCTTCCTTCATGC 12369 Query 107145 CGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTG 107204 || | ||||| ||| | |||||||| ||||||||||| ||||| | |||||| | Sbjct 12370 AAATCAAAAAGCACGAGGAGAGCTGCGGTCGAGGTGTACCAGCGTTGAACAAGGTTGGCG 12429 Query 107205 TTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGT 107264 || || | | | || | |||| | ||| ||| || || | | || || | Sbjct 12430 ACGCATGCGTCATCCAACGCTCAGACAACATGTGGTAGGTTTCAATAGCCTTTTCGATAT 12489 Query 107265 CTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGT 107303 | | | |||||| ||||||| || | ||| ||||||| Sbjct 12490 CCTTCTTGTGGATACCGATGGATACTCTCATCAACATGT 12528 >seq512 Length=5043 Score = 132 bits (146), Expect = 6e-26 Identities = 307/451 (68%), Gaps = 14/451 (3%) Strand=Plus/Minus Query 176852 ATCCACGACAATGCGGAGGTATTTGACACAAAGACCGAACACTCTATGAGGTACCTT--C 176909 |||||||| || || || ||||| ||| |||||||||| || |||| ||||| | Sbjct 3960 ATCCACGAAAACGCAGAAGTATTCGACGAAAAGACCGAATTGGCTTTGAG--ACCTTTGC 3903 Query 176910 AGATCTTAACGGCATGTTGTGATTCGTTCGCACACGGTGCCAATGATGTTGCCAATTCAA 176969 | | || || || || | ||||| ||| | ||||| || |||||||| || || || Sbjct 3902 AAGTTTTGACTGCTTGCTTAGATTCCTTCTCCCACGGAGCGAATGATGTCGCAAACTCTG 3843 Query 176970 TCGGACCATTTGCCGCCAT--TTACGCCATCTATAAATCCGGTACGGTCTCCAAGAATGC 177027 |||| || || ||||| || |||| | | || ||| | |||| | ||||| | Sbjct 3842 TCGGTCCGTTCGCCGCTATCGTTAC--CGTTTACAAAGCTGGTAGCATTAAGAAGAA-GA 3786 Query 177028 TGA-AATGGGTAACGACGCATATTGGATTCTCTCCCTCGGAGCTGGTGGAATAGTTGTGG 177086 || |||||| | || | || ||||| | ||| | ||||| || || || | | Sbjct 3785 TGCCAATGGGCGATGATTCCTACTGGATCTTGTCCTTGGGAGCGTTCGGTATCGTGATTG 3726 Query 177087 GTCTCGCGACATATGGCTATAAGATTCTTG-AGGCTCTTGGTACAAAAATG-GCAAAACT 177144 || | ||| || || || ||||| |||| | || | ||| || || |||||| | Sbjct 3725 GTTTGGCGTTGTACGGTTACAAGAT-CTTGCACGCCTTGGGTGGTAAGATTTGCAAAA-T 3668 Query 177145 TACACCGAGTCGTGGTATCTGTATTGAACTTGGCGCGGCCGCTGTCATCATTCTTGGCTC 177204 || ||| | | ||||| || || ||||| ||||| ||| || || || | || || Sbjct 3667 GACCCCGTCTAGAGGTATTTGCATCGAACTCGGCGCCGCCATGGTTATTATCATGGGTTC 3608 Query 177205 TCGCCTCGGGTGGCCACTCTCCACAACACATTGTCAAGTCGGTGCAACTGTGGGTGTCGC 177264 ||||||||| ||||| | ||||| || || || ||||| ||||| ||||| || || || Sbjct 3607 TCGCCTCGGCTGGCCGTTGTCCACGACTCACTGCCAAGTTGGTGCCACTGTTGGCGTTGC 3548 Query 177265 ACTCTTTGAAGGTACTGGTGGTGTGAATTGG 177295 || |||||| ||||||| | || ||| Sbjct 3547 GTGTTTGGAAGGTGTTGGTGGTATCAACTGG 3517 >seq6 Length=71040 Score = 102 bits (112), Expect = 1e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 158582 GAAATTGCGAAGCATAATACCGAAGAAGATTGTTGGGTAATTATCAAAGATATCGTGTAT 158641 ||| |||| ||||| ||| || | ||||||||||| ||| | | | | ||||| Sbjct 35981 GAAGTTGCAAAGCACGATAAAGACAACGATTGTTGGGTGATTTTGCACGGGAAAGTGTAC 36040 Query 158642 GATCTCACAAAGTTTTTGCCAGATCATCCAGGTGGCAAGAAGGCGATCATACTTTTCGCT 158701 || | || ||||||| || || ||||| || || ||||| || ||||| | ||||| Sbjct 36041 GACGTGACGGAGTTTTTACCGGACCATCCGGGAGGGAAGAAAGCAATCATGTTGTTCGCC 36100 Query 158702 GGAAAGGATGCGACGGAAGAGTTTGATATGCTCCATCCACCGAATGTTCTAAAGAAGTA 158760 || || || || ||||| |||||||| ||| | |||||||| || || | |||||||| Sbjct 36101 GGTAAAGACGCCACGGAGGAGTTTGACATGTTGCATCCACCAAACGTGTTGAAGAAGTA 36159 >seq51 Length=33875 Score = 95.1 bits (104), Expect = 1e-14 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 169338 GAAGCGTCGCGGACATTCTTACACTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGT 169397 ||||||||||| || ||| ||||||| || | ||||| || ||||||| || | Sbjct 6156 GAAGCGTCGCGAACGTTCAACAACTTCCCTCGCAACGGAAACACCCCATAGTTGTCTCTG 6097 Query 169398 CCAACGACGGAGAGACCCGCGACCGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATG 169457 ||||||| ||| | ||| | || || | | |||||| ||||| ||||| || | ||| Sbjct 6096 CCAACGATGGACAAACCGGAAACGGCCAATGCTTTCGCGGAATCCCCCTCGGTTAAAATC 6037 Query 169458 AGGGTACACTTTCCAGA-TTGCGCCGTACCCGCCTTGTTTGCGTCGTCCAACTTGGGAAT 169516 | || || ||| || || || | ||| || || || |||||||||||||| ||||| Sbjct 6036 AAAGTGCAGTTTTTGGAGTTACGTC-CACCGGCGTTATTCGCGTCGTCCAACTTTGGAAT 5978 Query 169517 ACCAGT 169522 ||||| Sbjct 5977 GCCAGT 5972 Score = 86.0 bits (94), Expect = 7e-12 Identities = 191/282 (68%), Gaps = 6/282 (2%) Strand=Plus/Minus Query 168488 ACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAATGTTGTTTGAACCCGTGTAGTC 168547 |||||||||||||||||| | ||| | | | ||| |||||||| | || | |||| Sbjct 7009 ACGCGTACCAAATTGACCGCTCGGGACTAACAAGTTTATGTTGTTCGTCCCAACGAAGTC 6950 Query 168548 GTTTGCCAACTTAACAATCGTGTCCGCTAAGGATACTTCACCATGGTGGTACGCAGACTT 168607 | || | || ||||| ||| ||| | || ||||||| ||||| || || || | Sbjct 6949 TTGCGCGAGATTGACAATTGTGGACGCGAGAGACGCTTCACCGTGGTGATAGGCTGAATG 6890 Query 168608 GTCCGCGACATATGCCGC-CAGTTGTGCCACCTTCATTTCATCCTTGAGATTCTTATGGA 168666 |||| ||| || |||| || ||| || || || || || ||| | || | | || Sbjct 6889 TTCCGAGACGTA-ACCGCTCAATTGCGCAACTTTGATGTCTGACTTTAACTTTCTCTTGA 6831 Query 168667 AGCAAGCATACATCACTTTCCTCTGTGAAGGCTTGAGACCATC--CGCCATATGGGCAAT 168724 |||| | | |||| ||||| | || ||||| |||| ||||| | | |||| ||| Sbjct 6830 AGCACGAAAACATAACTTTTCGTTGCGAAGGTTTGAAGCCATCGATGGCGGATGG--AAT 6773 Query 168725 AGAGCGCTTCAAGTCTGCCAAACTGAAATTGACCAGGTCTTT 168766 || ||| | || |||||||| |||| || || ||||| Sbjct 6772 CGAACGCATTAAATCTGCCAAGGAGAAAAGGATCAATTCTTT 6731 >seq112 Length=19657 Score = 84.2 bits (92), Expect = 3e-11 Identities = 276/420 (66%), Gaps = 18/420 (4%) Strand=Plus/Plus Query 9269 TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTC 9328 |||||| || | ||||||||||| || || | | ||||| || |||||||| | || Sbjct 1710 TGTTTCCTT--CGAAACCATCCATTTCAGTGAGCAACTGGTTGATCGTTTGTTCTCTCTC 1767 Query 9329 ATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCA 9386 || ||| | || ||| || | || || ||| || ||||||||||||||||| Sbjct 1768 GTCGTTCCC--GCCGCCCATACCGGAACCACGCTGCCGCCCGACGGCATCAATCTCATCG 1825 Query 9387 ATGAAGACAATACATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCT 9442 ||||||||||| || || || |||| || ||||||| | || | || | Sbjct 1826 ATGAAGACAATGCACGGTGCCTTCGATTTC----GCTTTTTCAAACAAGTCTCTGACGCG 1881 Query 9443 TTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGG 9502 |||||| || || || |||| || || || | | || | || || ||| || Sbjct 1882 AGAGGCGCCAACGCCGACGAACAATTCAACGAACTCGGACGCAGCGCAGGAGAAGAACGG 1941 Query 9503 GACATTAGATTCACCCGCAA-TGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTAC 9561 ||| | ||||||||||| || || || | | || ||||||||| ||||| ||| || Sbjct 1942 CACACCCGCTTCACCCGCAACTGCCTTGGCCAATAA-AGTCTTACCAGTACCCGGCGGAC 2000 Query 9562 CCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC-ACTTCCAAAGTATCTCTCAGGTTGC 9620 | | | | |||| ||| ||||| || || | || | ||| | || || | | Sbjct 2001 CGACCAACAAACAACCCTTTGGGATCTTCGCACCTAATTGC-GTGTACTTATCTGGGTTC 2059 Query 9621 TTGAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCG 9680 || | || || |||| |||| |||||| |||||| | |||| || |||| ||| Sbjct 2060 TTCAAGAAGTCGACAACTTCTTGCAATTCCAACTTGGCGCCTTCAACGCCGGCAACGTCG 2119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589965180258320