Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq41 147 2e-29 seq120 118 9e-21 seq624 89.7 4e-12 >seq41 Length=37566 Score = 147 bits (162), Expect = 2e-29 Identities = 380/568 (67%), Gaps = 31/568 (5%) Strand=Plus/Plus Query 368557 TTTGATAATTGGCTCCAAAATTCAGTTGATTGGTGTATTTCAAGAAGTAGGTTTTGGGGA 368616 ||| | || ||||| ||||| | ||||||| |||||| | | || ||||||||| Sbjct 14853 TTTCACAACTGGCTTGAAAATGTACACGATTGGTCAATTTCACGGAACAGATTTTGGGGA 14912 Query 368617 ACTCCAATTCCAGTATGGAAATCTGATGATGGTGAAGAAATTGTTTGTATAGGTTCAATT 368676 ||||| ||||| || |||| || |||||||||| ||| | || ||||| || Sbjct 14913 ACTCCCATTCCTGTCTGGACTTCACCCAATGGTGAAGAGATTCGTGTAATTGGTTCTGTT 14972 Query 368677 AAAGAATTGCAAGAATTATCTGGTGTGCAAAATATTAGTGATTTACATATTGATAAAATT 368736 ||||| | | || ||||| | |||| | |||||| | |||| || ||| Sbjct 14973 GAAGAACTCGAGCGCTTGTCTGGGG---AAAAAGTGAGTGATCTTCATAGACATTTCATT 15029 Query 368737 GATCACATTAAAATTCCATCAAAGAAAGGAAAAGGTTTATTG------TC-TCGAGTTGA 368789 ||||| | ||||||| || ||| | | | || || | | || || Sbjct 15030 GATCATTTGGAAATTCCTTCTTCCCGAGGTACTGACT-ATCCCAGCCTTCGTAGGGTAGA 15088 Query 368790 AGGAGTTTTGGATTGCTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATACATTATCC 368849 | ||||| ||||||||||||||| || |||||||||| ||| ||||||||| Sbjct 15089 GGATGTTTTTGATTGCTGGTTTGAAAGTGGAAGCATGCCTTATGCTCAGCAACATTATCC 15148 Query 368850 ATTTGATAACGCAAAATACTTTGATAATGATAAAGATTATGTGGCTGATTTTGTAACAGA 368909 ||||| ||| | |||||||||| | || ||| | |||||||||||| | || Sbjct 15149 TTTTGAGAACAAACAATACTTTGA-GAGGA-----ATTTTCCGGCTGATTTTGTTGCTGA 15202 Query 368910 ATCAATTGATCAAACACGTGGTTGGTTTTATACCCTATTAGTATTATCCACAGCTATTTT 368969 | | |||||||| ||||||||||| ||||| | | ||| | || || | | | || Sbjct 15203 AGGCCTCGATCAAACGCGTGGTTGGTTCTATACGTTGATGGTACTTTCAACTGGTCTATT 15262 Query 368970 CGATAAACCGGCTTTTAAAAATGT-AATAGTAACTGGTATTGTTAATGCATCTGATGGTC 369028 ||| || || || |||||| | | | |||| |||| ||||| ||||| ||||| Sbjct 15263 TGATCGTCCAGCATTCAAAAATCTCATTTGTAA-TGGTCTTGTTTTAGCATCCGATGGAA 15321 Query 369029 AAAAGATGT-CAAAAAGT--AAGGGTAATTATTCCGATC---CTAATATTTTAATTGATA 369082 |||| |||| ||| || ||| |||||| | |||| |||| || |||| || Sbjct 15322 AAAAAATGTCCAAGTCGTTGAAG---AATTATCCTGATCCGTCTAAGATATTAA---ATG 15375 Query 369083 AATTTGGTGCTGATACTTTGAGATTATA 369110 | | |||||||||| |||| | ||||| Sbjct 15376 ACTATGGTGCTGATGCTTTACGCTTATA 15403 >seq120 Length=18829 Score = 118 bits (130), Expect = 9e-21 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 550043 AATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTT 550102 ||||| ||||||||||| || || ||||| ||||| || || | |||||||||||| ||| Sbjct 8631 AATGGGAAAGTTGAAATAATCGCAAATGACCAAGGCAATAGGATTACTCCATCTTACGTT 8690 Query 550103 TCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAAT 550162 | || ||||| | ||||| | | | || ||||| || ||| |||||||||| |||| Sbjct 8691 GCATTTACGGATAATGAACGTCTGATCGGAGATGCTGCGAAAAATCAAGCCACCTCTAAT 8750 Query 550163 CCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAA 550205 || || || ||||| || |||||| | || ||||| |||| Sbjct 8751 CCAACACGAACCATTTTCGACGCTAAAAGATTGATTGGTAGAA 8793 >seq624 Length=3705 Score = 89.7 bits (98), Expect = 4e-12 Identities = 198/297 (67%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 552303 GATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATC 552362 || || ||||| || || ||||| | ||||| |||| ||| | ||||| || || || Sbjct 1910 GACGTCACTCCACTTTCCCTTGGACTTGAAACTCTTGGGGGTGTCATGACGAAGCTCATT 1969 Query 552363 GATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAAT 552422 | | || || || | ||| | |||||| || || || || | | ||| | Sbjct 1970 CCTCGTAACACAACGTTACCTACTTCGAAATCTGAAGTTTTCTCCACTGCTGCTGATGGT 2029 Query 552423 CAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAAT 552482 ||||| ||| |||| | || | ||||||||||| | || ||||| ||||| Sbjct 2030 CAAACCAGTGTAGAAATTAACGTTCTGCAAGGAGAAAGAGAGTTTGTAAAAGACAATAAA 2089 Query 552483 CAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATT 552542 || |||| ||| || || || || || ||||||| || ||||| ||||| ||| Sbjct 2090 AGTCTCGGTAACTTTCGATTGGATGGAATACCATCTGCTCCCCGCGGAGTTCCGCAGATT 2149 Query 552543 GAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAA 552599 ||||| | || ||||| ||||| || |||||| | ||| |||||||| ||| Sbjct 2150 GAAGTCAAGTTTGATATAGATGCAAACGGAATTCTTTCTGTCGAAGCTTGTGACAAA 2206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029183990607820