Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq330 116 7e-21 seq329 116 7e-21 seq327 116 7e-21 seq114 116 7e-21 >seq330 Length=7938 Score = 116 bits (128), Expect = 7e-21 Identities = 293/440 (67%), Gaps = 13/440 (3%) Strand=Plus/Minus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 || || || || || | |||||||||||||| ||||| || | ||| ||||| ||| Sbjct 4325 TGATATTCACCGACACGCTTCTCAAAGAAGTTCGTCTTGCCTTGCAAGGAGATCAATTCC 4266 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGG 47959 || || || ||||| | |||||||| || | | ||| | ||| |||| | Sbjct 4265 ATCCAGTCAAACGGGTTCGCGGTGTTATATTCCTTCGCGAAGCCGAGCTGCGAGAGCAAG 4206 Query 47960 TGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGAC 48019 ||||| || || ||||||||||| | | ||| | | | |||||| || | || | | Sbjct 4205 TGATCGGCAACATACTCGATGTAATCTCTCATCATGTCGGCGTTCATACCGACAAGCG-C 4147 Query 48020 ACG-GGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 || ||||| || | | |||||||||||| |||| || ||||| ||||||| Sbjct 4146 ACATGGCAACGCATCGCACACAAACTCCTTCTCAATCTCAACCGCTTCGGTAACAATCTT 4087 Query 48079 -CTTAACG---CGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 || || | || | | | ||| ||| || | | || |||| ||| | Sbjct 4086 TCTCAATTTTTCTTCACCCGGCGTGTT-GTTTAACA------TAGTGTAAAGCAAGCACG 4034 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 | || || |||||||| ||||| || | | ||| | | | ||||||||| || || | Sbjct 4033 CGAAATCTCTGTGCAAACCTTCATCTCTGGAGATCAACTCATTGGAGAAGGTAAGCCCCG 3974 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||| | || |||| ||||||||| | || | ||||||||| || |||||||||| Sbjct 3973 GCATCATGCCTCTCTTCTTGAGCCAGTAGATGGAGCAGAAAGAGCCGGAAAAGAAGATGC 3914 Query 48255 CCTCCACTGCCGCGAACGCG 48274 | || || ||||||||| Sbjct 3913 CTTCGACGCAGGCGAACGCG 3894 >seq329 Length=7938 Score = 116 bits (128), Expect = 7e-21 Identities = 293/440 (67%), Gaps = 13/440 (3%) Strand=Plus/Minus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 || || || || || | |||||||||||||| ||||| || | ||| ||||| ||| Sbjct 4325 TGATATTCACCGACACGCTTCTCAAAGAAGTTCGTCTTGCCTTGCAAGGAGATCAATTCC 4266 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGG 47959 || || || ||||| | |||||||| || | | ||| | ||| |||| | Sbjct 4265 ATCCAGTCAAACGGGTTCGCGGTGTTATATTCCTTCGCGAAGCCGAGCTGCGAGAGCAAG 4206 Query 47960 TGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGAC 48019 ||||| || || ||||||||||| | | ||| | | | |||||| || | || | | Sbjct 4205 TGATCGGCAACATACTCGATGTAATCTCTCATCATGTCGGCGTTCATACCGACAAGCG-C 4147 Query 48020 ACG-GGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 || ||||| || | | |||||||||||| |||| || ||||| ||||||| Sbjct 4146 ACATGGCAACGCATCGCACACAAACTCCTTCTCAATCTCAACCGCTTCGGTAACAATCTT 4087 Query 48079 -CTTAACG---CGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 || || | || | | | ||| ||| || | | || |||| ||| | Sbjct 4086 TCTCAATTTTTCTTCACCCGGCGTGTT-GTTTAACA------TAGTGTAAAGCAAGCACG 4034 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 | || || |||||||| ||||| || | | ||| | | | ||||||||| || || | Sbjct 4033 CGAAATCTCTGTGCAAACCTTCATCTCTGGAGATCAACTCATTGGAGAAGGTAAGCCCCG 3974 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||| | || |||| ||||||||| | || | ||||||||| || |||||||||| Sbjct 3973 GCATCATGCCTCTCTTCTTGAGCCAGTAGATGGAGCAGAAAGAGCCGGAAAAGAAGATGC 3914 Query 48255 CCTCCACTGCCGCGAACGCG 48274 | || || ||||||||| Sbjct 3913 CTTCGACGCAGGCGAACGCG 3894 >seq327 Length=7986 Score = 116 bits (128), Expect = 7e-21 Identities = 293/440 (67%), Gaps = 13/440 (3%) Strand=Plus/Plus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 || || || || || | |||||||||||||| ||||| || | ||| ||||| ||| Sbjct 3662 TGATATTCACCGACACGCTTCTCAAAGAAGTTCGTCTTGCCTTGCAAGGAGATCAATTCC 3721 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGG 47959 || || || ||||| | |||||||| || | | ||| | ||| |||| | Sbjct 3722 ATCCAGTCAAACGGGTTCGCGGTGTTATATTCCTTCGCGAAGCCGAGCTGCGAGAGCAAG 3781 Query 47960 TGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGAC 48019 ||||| || || ||||||||||| | | ||| | | | |||||| || | || | | Sbjct 3782 TGATCGGCAACATACTCGATGTAATCTCTCATCATGTCGGCGTTCATACCGACAAGCG-C 3840 Query 48020 ACG-GGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 || ||||| || | | |||||||||||| |||| || ||||| ||||||| Sbjct 3841 ACATGGCAACGCATCGCACACAAACTCCTTCTCAATCTCAACCGCTTCGGTAACAATCTT 3900 Query 48079 -CTTAACG---CGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 || || | || | | | ||| ||| || | | || |||| ||| | Sbjct 3901 TCTCAATTTTTCTTCACCCGGCGTGTT-GTTTAACA------TAGTGTAAAGCAAGCACG 3953 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 | || || |||||||| ||||| || | | ||| | | | ||||||||| || || | Sbjct 3954 CGAAATCTCTGTGCAAACCTTCATCTCTGGAGATCAACTCATTGGAGAAGGTAAGCCCCG 4013 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||| | || |||| ||||||||| | || | ||||||||| || |||||||||| Sbjct 4014 GCATCATGCCTCTCTTCTTGAGCCAGTAGATGGAGCAGAAAGAGCCGGAAAAGAAGATGC 4073 Query 48255 CCTCCACTGCCGCGAACGCG 48274 | || || ||||||||| Sbjct 4074 CTTCGACGCAGGCGAACGCG 4093 >seq114 Length=19556 Score = 116 bits (128), Expect = 7e-21 Identities = 293/440 (67%), Gaps = 13/440 (3%) Strand=Plus/Minus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 || || || || || | |||||||||||||| ||||| || | ||| ||||| ||| Sbjct 4325 TGATATTCACCGACACGCTTCTCAAAGAAGTTCGTCTTGCCTTGCAAGGAGATCAATTCC 4266 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGG 47959 || || || ||||| | |||||||| || | | ||| | ||| |||| | Sbjct 4265 ATCCAGTCAAACGGGTTCGCGGTGTTATATTCCTTCGCGAAGCCGAGCTGCGAGAGCAAG 4206 Query 47960 TGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGAC 48019 ||||| || || ||||||||||| | | ||| | | | |||||| || | || | | Sbjct 4205 TGATCGGCAACATACTCGATGTAATCTCTCATCATGTCGGCGTTCATACCGACAAGCG-C 4147 Query 48020 ACG-GGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 || ||||| || | | |||||||||||| |||| || ||||| ||||||| Sbjct 4146 ACATGGCAACGCATCGCACACAAACTCCTTCTCAATCTCAACCGCTTCGGTAACAATCTT 4087 Query 48079 -CTTAACG---CGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 || || | || | | | ||| ||| || | | || |||| ||| | Sbjct 4086 TCTCAATTTTTCTTCACCCGGCGTGTT-GTTTAACA------TAGTGTAAAGCAAGCACG 4034 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 | || || |||||||| ||||| || | | ||| | | | ||||||||| || || | Sbjct 4033 CGAAATCTCTGTGCAAACCTTCATCTCTGGAGATCAACTCATTGGAGAAGGTAAGCCCCG 3974 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||| | || |||| ||||||||| | || | ||||||||| || |||||||||| Sbjct 3973 GCATCATGCCTCTCTTCTTGAGCCAGTAGATGGAGCAGAAAGAGCCGGAAAAGAAGATGC 3914 Query 48255 CCTCCACTGCCGCGAACGCG 48274 | || || ||||||||| Sbjct 3913 CTTCGACGCAGGCGAACGCG 3894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931508137669120