Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq330 102 2e-16 seq329 102 2e-16 seq327 102 2e-16 seq114 102 2e-16 >seq330 Length=7938 Score = 102 bits (112), Expect = 2e-16 Identities = 293/451 (65%), Gaps = 9/451 (2%) Strand=Plus/Plus Query 25875 CGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCG 25932 ||| || |||| || || || ||| || || |||||||| || ||| || || ||| Sbjct 3882 CGAACGTTTGGTCGCGTTCGCCTGC-GTCGAAGGCATCTTCTTTTCCGGCTCTTTCTGCT 3940 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 |||||| |||||||||| ||| || | ||||| ||||| ||| ||||| ||| | Sbjct 3941 -CCATCTACTGGCTCAAGAAGAGAGGCATGATGCCGGGGCTTACCTTCTCCAATGAGTTG 3999 Query 25993 ATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTG 26052 ||| ||| || || ||| | ||||||||||| || ||| |||| ||||| || Sbjct 4000 ATCTCCAGAGATGAAGGTTTGCACAGAGATTTCGCGTGCTTGCTTTACAC---TATGTTA 4056 Query 26053 CTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAG 26112 | ||| || | |||| | | | || | | || || || ||||| ||| Sbjct 4057 AACAACACGCCGGGTGAAGAAAAATTGAGAAAGATTGTTACCGAAGCGGTTGAGATTGAG 4116 Query 26113 AAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGAC-TCAT 26171 ||||||||| | || |||||| | ||| | || Sbjct 4117 AAGGAGTTTGTGTGCGATGCGTTGCCATGTGCGCTTGTCGGTATGAAC-GCCGACATGAT 4175 Query 26172 GAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACT 26231 ||| | ||||| |||||||| ||||| || |||| | ||||| || |||| | Sbjct 4176 GAGAGATTACATCGAGTATGTTGCCGATCACTTGCTCTCGCAGCTCGGCTTCGCGAAGGA 4235 Query 26232 CTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAA 26291 || | || | |||||||| |||| |||||| || || ||| |||| ||||| || Sbjct 4236 ATATAACACCGCGAACCCGTTTGACTGGATGGAATTGATCTCCTTGCAAGGCAAGACGAA 4295 Query 26292 CTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322 ||||||||| ||| | ||||| || |||||| Sbjct 4296 CTTCTTTGAGAAGCGTGTCGGTGAATATCAA 4326 >seq329 Length=7938 Score = 102 bits (112), Expect = 2e-16 Identities = 293/451 (65%), Gaps = 9/451 (2%) Strand=Plus/Plus Query 25875 CGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCG 25932 ||| || |||| || || || ||| || || |||||||| || ||| || || ||| Sbjct 3882 CGAACGTTTGGTCGCGTTCGCCTGC-GTCGAAGGCATCTTCTTTTCCGGCTCTTTCTGCT 3940 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 |||||| |||||||||| ||| || | ||||| ||||| ||| ||||| ||| | Sbjct 3941 -CCATCTACTGGCTCAAGAAGAGAGGCATGATGCCGGGGCTTACCTTCTCCAATGAGTTG 3999 Query 25993 ATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTG 26052 ||| ||| || || ||| | ||||||||||| || ||| |||| ||||| || Sbjct 4000 ATCTCCAGAGATGAAGGTTTGCACAGAGATTTCGCGTGCTTGCTTTACAC---TATGTTA 4056 Query 26053 CTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAG 26112 | ||| || | |||| | | | || | | || || || ||||| ||| Sbjct 4057 AACAACACGCCGGGTGAAGAAAAATTGAGAAAGATTGTTACCGAAGCGGTTGAGATTGAG 4116 Query 26113 AAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGAC-TCAT 26171 ||||||||| | || |||||| | ||| | || Sbjct 4117 AAGGAGTTTGTGTGCGATGCGTTGCCATGTGCGCTTGTCGGTATGAAC-GCCGACATGAT 4175 Query 26172 GAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACT 26231 ||| | ||||| |||||||| ||||| || |||| | ||||| || |||| | Sbjct 4176 GAGAGATTACATCGAGTATGTTGCCGATCACTTGCTCTCGCAGCTCGGCTTCGCGAAGGA 4235 Query 26232 CTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAA 26291 || | || | |||||||| |||| |||||| || || ||| |||| ||||| || Sbjct 4236 ATATAACACCGCGAACCCGTTTGACTGGATGGAATTGATCTCCTTGCAAGGCAAGACGAA 4295 Query 26292 CTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322 ||||||||| ||| | ||||| || |||||| Sbjct 4296 CTTCTTTGAGAAGCGTGTCGGTGAATATCAA 4326 >seq327 Length=7986 Score = 102 bits (112), Expect = 2e-16 Identities = 293/451 (65%), Gaps = 9/451 (2%) Strand=Plus/Minus Query 25875 CGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCG 25932 ||| || |||| || || || ||| || || |||||||| || ||| || || ||| Sbjct 4105 CGAACGTTTGGTCGCGTTCGCCTGC-GTCGAAGGCATCTTCTTTTCCGGCTCTTTCTGCT 4047 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 |||||| |||||||||| ||| || | ||||| ||||| ||| ||||| ||| | Sbjct 4046 -CCATCTACTGGCTCAAGAAGAGAGGCATGATGCCGGGGCTTACCTTCTCCAATGAGTTG 3988 Query 25993 ATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTG 26052 ||| ||| || || ||| | ||||||||||| || ||| |||| ||||| || Sbjct 3987 ATCTCCAGAGATGAAGGTTTGCACAGAGATTTCGCGTGCTTGCTTTACAC---TATGTTA 3931 Query 26053 CTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAG 26112 | ||| || | |||| | | | || | | || || || ||||| ||| Sbjct 3930 AACAACACGCCGGGTGAAGAAAAATTGAGAAAGATTGTTACCGAAGCGGTTGAGATTGAG 3871 Query 26113 AAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGAC-TCAT 26171 ||||||||| | || |||||| | ||| | || Sbjct 3870 AAGGAGTTTGTGTGCGATGCGTTGCCATGTGCGCTTGTCGGTATGAAC-GCCGACATGAT 3812 Query 26172 GAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACT 26231 ||| | ||||| |||||||| ||||| || |||| | ||||| || |||| | Sbjct 3811 GAGAGATTACATCGAGTATGTTGCCGATCACTTGCTCTCGCAGCTCGGCTTCGCGAAGGA 3752 Query 26232 CTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAA 26291 || | || | |||||||| |||| |||||| || || ||| |||| ||||| || Sbjct 3751 ATATAACACCGCGAACCCGTTTGACTGGATGGAATTGATCTCCTTGCAAGGCAAGACGAA 3692 Query 26292 CTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322 ||||||||| ||| | ||||| || |||||| Sbjct 3691 CTTCTTTGAGAAGCGTGTCGGTGAATATCAA 3661 >seq114 Length=19556 Score = 102 bits (112), Expect = 2e-16 Identities = 293/451 (65%), Gaps = 9/451 (2%) Strand=Plus/Plus Query 25875 CGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCG 25932 ||| || |||| || || || ||| || || |||||||| || ||| || || ||| Sbjct 3882 CGAACGTTTGGTCGCGTTCGCCTGC-GTCGAAGGCATCTTCTTTTCCGGCTCTTTCTGCT 3940 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 |||||| |||||||||| ||| || | ||||| ||||| ||| ||||| ||| | Sbjct 3941 -CCATCTACTGGCTCAAGAAGAGAGGCATGATGCCGGGGCTTACCTTCTCCAATGAGTTG 3999 Query 25993 ATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTG 26052 ||| ||| || || ||| | ||||||||||| || ||| |||| ||||| || Sbjct 4000 ATCTCCAGAGATGAAGGTTTGCACAGAGATTTCGCGTGCTTGCTTTACAC---TATGTTA 4056 Query 26053 CTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAG 26112 | ||| || | |||| | | | || | | || || || ||||| ||| Sbjct 4057 AACAACACGCCGGGTGAAGAAAAATTGAGAAAGATTGTTACCGAAGCGGTTGAGATTGAG 4116 Query 26113 AAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGAC-TCAT 26171 ||||||||| | || |||||| | ||| | || Sbjct 4117 AAGGAGTTTGTGTGCGATGCGTTGCCATGTGCGCTTGTCGGTATGAAC-GCCGACATGAT 4175 Query 26172 GAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACT 26231 ||| | ||||| |||||||| ||||| || |||| | ||||| || |||| | Sbjct 4176 GAGAGATTACATCGAGTATGTTGCCGATCACTTGCTCTCGCAGCTCGGCTTCGCGAAGGA 4235 Query 26232 CTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAA 26291 || | || | |||||||| |||| |||||| || || ||| |||| ||||| || Sbjct 4236 ATATAACACCGCGAACCCGTTTGACTGGATGGAATTGATCTCCTTGCAAGGCAAGACGAA 4295 Query 26292 CTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322 ||||||||| ||| | ||||| || |||||| Sbjct 4296 CTTCTTTGAGAAGCGTGTCGGTGAATATCAA 4326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928820208833920