Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq120 208 5e-48 seq41 116 2e-20 >seq120 Length=18829 Score = 208 bits (230), Expect = 5e-48 Identities = 414/604 (69%), Gaps = 22/604 (4%) Strand=Plus/Plus Query 475691 CAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATG 475750 ||| || ||||||||||| | || || || |||||||| || || ||| | ||| Sbjct 9705 CAAATCGATGAAATTGTTTTAGTCGGTGGCTCAACAAGGATCCCTAAAGTTCAGGAA--- 9761 Query 475751 CTTTCATCATATT---TTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCT 475807 |||| | | ||| | |||| || | | || |||| ||||| ||||||||| Sbjct 9762 CTTTTAAAAGATTACTTCGATGGCAAGGAACCGAGCAAAGGTGTGAATCCAGATGAAGCT 9821 Query 475808 GTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGACGA-GAAACT 475866 ||||||||||| || |||||||||| | || ||||| || || | || ||||| Sbjct 9822 GTTGCATATGGTGCGGCTGTCCAAGGTGGGATCTTATCTGGCGAAGGGGGAGATGAAACG 9881 Query 475867 AAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGG 475926 || | || | || |||||||| | || | || |||| ||||||||||||| || Sbjct 9882 AAGGAC-ATACTTCTCCTTGACGTAGCACCTTTAACACAAGGTATTGAAACAGTTGGTGG 9940 Query 475927 GATTATGACTAATCTTATTGA---CA-GAAATACTCCTATCCCATGCAAAAAATCAAAAG 475982 | | ||||| || ||||| || |||||||| || ||| ||||| || || Sbjct 9941 GGTCATGACGAA----ATTGATCCCACGAAATACTGTGATACCAACAAAAAAGTCTCAAA 9996 Query 475983 TATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAA 476042 || | || ||| |||||||| |||||||| || || | ||||| ||||||| Sbjct 9997 CTTTCACAACGTATCAAGATAATCAGCAAACTGTAATGATACAGGTTTTTGAGGGTGAAA 10056 Query 476043 GAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTG 476102 || | || || |||||| || ||| || | ||| | || | |||||||||| Sbjct 10057 GAGCCATGACGAAGGATAATCACTTACTGGGCAAATTTGAACTCACATCGATTCCTCCTG 10116 Query 476103 CTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTA 476162 | || || || || ||||||||||| ||||| ||||| ||||||||||| || ||||| | Sbjct 10117 CACCAAGGGGTGTGCCTCAAATTGAGGTTACGTTTGAAATTGATGCAAACGGGATTCTAA 10176 Query 476163 ATGTTACTGCTTGTGATAA---ATCTAGTAACAAGAGTAAAAATATAACTATTACAAACA 476219 | ||| ||| ||||| | || |||| | || | || || || || |||||| Sbjct 10177 ACGTTGGTGCGGAAGATAAAGGAACTGGTAA-ATCAG--AGAAAATTACGATAACAAACG 10233 Query 476220 ATCGTGGTAGATTTACTGAAGAACAAATTCAACGTATGGTTGATGAAGCCAAAGAGTTTG 476279 || || ||| || || | ||| ||||| |||||||||| || ||||| |||| || | Sbjct 10234 ATAAAGGGAGACTTTCTCAGGAAGAAATTGAACGTATGGTCGAAGAAGCTGAAGAATTCG 10293 Query 476280 AAGA 476283 ||| Sbjct 10294 CAGA 10297 Score = 134 bits (148), Expect = 9e-26 Identities = 125/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 474380 AATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTT 474439 ||||| ||||| |||||||| || ||||||||||| ||||| | || ||||| || ||| Sbjct 8631 AATGGGAAAGTTGAAATAATCGCAAATGACCAAGGCAATAGGATTACTCCATCTTACGTT 8690 Query 474440 TCTTTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAAT 474499 | ||||| || | ||||| ||| || ||||||||||| ||| ||||||| | |||||| Sbjct 8691 GCATTTACGGATAATGAACGTCTGATCGGAGATGCTGCGAAAAATCAAGCCACCTCTAAT 8750 Query 474500 CCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGT 474538 || || ||||| || |||||||||||||||||| Sbjct 8751 CCAACACGAACCATTTTCGACGCTAAAAGATTGATTGGT 8789 Score = 100 bits (110), Expect = 2e-15 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 474754 AGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCT 474813 ||||||||| |||||| | || ||||||||||| || ||||| || | ||||||||| || Sbjct 9112 AGCATATTTCAATGATGCACAGCGTCAAGCAACAAAGGATGCTGGGACAATTGCAGGACT 9171 Query 474814 TAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAA 474873 || || | ||||| || || || || || ||||| |||| |||||||||||||| Sbjct 9172 CAACGTCGCTAGAATTATCAACGAGCCTACTGCGGCCGCCATTGCCTATGGTCTTGATAA 9231 Query 474874 GAA 474876 ||| Sbjct 9232 GAA 9234 >seq41 Length=37566 Score = 116 bits (128), Expect = 2e-20 Identities = 371/562 (66%), Gaps = 29/562 (5%) Strand=Plus/Plus Query 297112 GATTGGTGTATTTCAAGAAGTAGATATTGGGGAACACCAATTCCAATTTGGAAATCTGAT 297171 ||||||| |||||| | | |||| ||||||||| || ||||| | |||| || Sbjct 14880 GATTGGTCAATTTCACGGAACAGATTTTGGGGAACTCCCATTCCTGTCTGGACTTCACCC 14939 Query 297172 GATGGTGAAGAAATAATTTGTATTGGTTCACTTGAAGAATTAAAAGAATTTTCAGGAATT 297231 |||||||||| || | |||||||| |||||||| | | || || || Sbjct 14940 AATGGTGAAGAGATTCGTGTAATTGGTTCTGTTGAAGAACTCGAGCGCTTGTCTGGG--- 14996 Query 297232 GATAATATTAATGATTTACATATTGATAAAATTGATCAAATAAAAATTCCTTCTCGTAAA 297291 || || | | |||| | |||| || |||||||| | ||||||||||| | Sbjct 14997 GAAAAAGTGAGTGATCTTCATAGACATTTCATTGATCATTTGGAAATTCCTTCTTCCCGA 15056 Query 297292 GGAAAAGGC-ATGTTATC--TCGT--GTTACCGG-TGTTTTAGATTGTTGGTTTGAATCA 297345 || | | | || | | |||| | || || |||||| ||||| ||||||||| Sbjct 15057 GGTACTGACTATCCCAGCCTTCGTAGGGTAGAGGATGTTTTTGATTGCTGGTTTGAAAGT 15116 Query 297346 GGTTCTATGCCTTATGGTCAAATTCATTATCCTTTTGAAAATTCCGAAATTTTAGACACT 297405 || |||||||||| ||| |||||||||||||| || ||| || | Sbjct 15117 GGAAGCATGCCTTATGCTCAGCAACATTATCCTTTTGAGAAC----AAACAATACT---T 15169 Query 297406 TCACAAGA-TTATATTGCAGATTTTATAACAGAATCAATTGATCAAACAAGAGGTTGGTT 297464 | | | || || | || |||||| | | ||| | |||||||| | |||||||| Sbjct 15170 TGAGAGGAATTTTCCGGCTGATTTTGTTGCTGAAGGCCTCGATCAAACGCGTGGTTGGTT 15229 Query 297465 TTATACTTTATTAGTTCTTTCTACAGCTATATTTAACAAACCAGCATTTAAAAATGTAAT 297524 ||||| || | || ||||| || | | ||||| | |||||||| |||||| | || Sbjct 15230 CTATACGTTGATGGTACTTTCAACTGGTCTATTTGATCGTCCAGCATTCAAAAATCTCAT 15289 Query 297525 TGTTACAGGAATTGTTAACGCAGCTGATGGACAAAAAATGTCAAAAA-GTAAAGGTAATT 297583 | || || ||||| ||| | |||||| |||||||||| || || | | |||| Sbjct 15290 TTGTAATGGTCTTGTTTTAGCATCCGATGGAAAAAAAATGTCCAAGTCGTTGAAG-AATT 15348 Query 297584 ATCCTGATC---CAAATATTTTGATGGATAAATATGGTGCAGATACTTTACGTCTTTATT 297640 ||||||||| | || || || | || | |||||||| ||| ||||||| |||| Sbjct 15349 ATCCTGATCCGTCTAAGATATTAA---ATGACTATGGTGCTGATGCTTTACG--CTTATA 15403 Query 297641 TATTATCAACA--CCTGTAGTT 297660 | | ||||| | ||||| ||| Sbjct 15404 TTTGATCAATAGTCCTGTTGTT 15425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268088348703464