Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq11 167 3e-36 seq512 132 6e-26 seq6 102 1e-16 seq51 86.0 7e-12 >seq11 Length=57886 Score = 167 bits (184), Expect = 3e-36 Identities = 578/889 (65%), Gaps = 27/889 (3%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 |||||| ||||||| ||| | || | ||||| |||||| | | || || || | Sbjct 12535 CCACAGCACATGTTGATGAGAGTATCCATCGGTATCCACAAGAAGGATATCGAAAAGGCT 12476 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 | || || ||| ||| | |||| | || | | | || || | |||||| | ||| Sbjct 12475 ATTGAAACCTACCACATGTTGTCTGAGCGTTGGATGACGCATGCGTCGCCAACCTTGTTC 12416 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 || ||||||||||| |||||||| | ||| ||||| | || || ||||| ||| Sbjct 12415 AACGCTGGTACACCTCGACCGCAGCTCTCCTCGTGCTTTTTGATTTGCATGAAGGAAGAC 12356 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451 || || | |||||||| | || | | |||||| ||| || || |||| || || Sbjct 12355 TCCATTGAAGGTATCTACGACACGTTGAAGGAGTGCGCGTGCATTTCCAAGTCCGCCGGT 12296 Query 75452 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATC-TCGTAT-TC-GGGGGACA 75508 ||||| || || ||| || || | | ||| | || |||||| || | || ||| Sbjct 12295 GGTATCGGTTTGTCCATTCACGACATCCGTGCC---ACGTCTTCGTATATCAGAGGCACA 12239 Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568 || ||| || | ||||||||||| |||||||| || || |||| ||||||| | ||| Sbjct 12238 AACGGTACTTCGAACGGTATTATTCCGATGCTTCGGGTGTTCAACGACACAGCGAGGTAT 12179 Query 75569 GTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCAT 75625 || | |||| || || |||||||| | | || |||| | ||||||||||| Sbjct 12178 GTGGACCAAGGCGGCGGTAAGCGCAAGGGCGCTTTTGCCATCTATCTCGAACCATGGCAC 12119 Query 75626 GCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGT 75685 | || ||| | || | || || || || ||||| || | ||||| ||| | | Sbjct 12118 TCGGACATCTTCGACTGGCTCGATTTGAGAAAGAACCACGGCAAGGAAGAAGCTAGAGCT 12059 Query 75686 AGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGT 75745 | || | |||| | |||||| || | |||||||| | || || || Sbjct 12058 CGTGACTTGTTTTACGGCTTGTGGACGAACGATTTGTTCATGAAAAGAGTCGAAGAAAAC 11999 Query 75746 GGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCG-ACGCGGTGGGTGA 75804 || | ||| | || | || || || || || ||| | |||| | || | |||||| Sbjct 11998 GGCAAGTGGACACTGATGTGCCCGAACGAGTGCCCGGGTTTGTCCGAATGCTG-GGGTGA 11940 Query 75805 GGAGTTTGAAGCCCTCTACACAAAGTATG-AAGAG-----GAGGGTA--GAGCCAATGCG 75856 || || ||||| || ||||| ||||| | ||||| |||| | || |||| Sbjct 11939 AGAATTCGAAGCTCTGTACACCAAGTACGAAAGAGAAAACAAGGGCAAGAAGACAAT--T 11882 Query 75857 ACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACA 75916 | || ||||| || ||||| ||||||||| || | || ||| ||||| | Sbjct 11881 AATG-CCCAGCAGC-----TTTGGTTTGCTATTCTCGAAGCGCAAGTGGAAACTGGCAAC 11828 Query 75917 CCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACA 75976 ||||| ||| | | |||||||| || ||| ||| |||||| | ||||| || || Sbjct 11827 CCATACATGTTGTTTAAGGATGCGTGCAACCGCAAGTCAAACCAACAAAATTTAGGCACG 11768 Query 75977 ATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCT 76036 ||||| || || | || || || || | || ||||| || || || || Sbjct 11767 ATCAAATCGTCCAACTTGTGTACAGAGATCGTCGAATACACTTCACCAGAAGAAACCGCC 11708 Query 76037 GTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGA 76085 |||||||| |||||||| ||||| | ||| | ||||| ||| ||| Sbjct 11707 GTTTGCAACTTGGCATCCATCGCTTTGCCACGATTTGTCATCGAAAAGA 11659 >seq512 Length=5043 Score = 132 bits (146), Expect = 6e-26 Identities = 307/451 (68%), Gaps = 14/451 (3%) Strand=Plus/Plus Query 5777 CCAATTCACACCACCAGTACCTTCAAAGAGTGCGACACCCACAGTTGCACCGACTTGACA 5836 ||| || | ||||||| |||||| || || || || ||||| ||||| ||||| || Sbjct 3517 CCAGTTGATACCACCAACACCTTCCAAACACGCAACGCCAACAGTGGCACCAACTTGGCA 3576 Query 5837 ATGTGTTGTGGAGAGTGGCCACCCGAGGCGAGAGCCAAGAATGATGACAGCGGCCGCGCC 5896 || || ||||| | ||||| ||||||||||| || | || || || ||| ||||| Sbjct 3577 GTGAGTCGTGGACAACGGCCAGCCGAGGCGAGAACCCATGATAATAACCATGGCGGCGCC 3636 Query 5897 AAGTTCAATACAGATACCACGACTCGGTGTAAGTTTTGC-CATTTTTGTACCAAGAGCCT 5955 ||||| || || ||||| | | ||| || | |||||| || || ||| | || | Sbjct 3637 GAGTTCGATGCAAATACCTCTAGACGGGGTCA-TTTTGCAAATCTTACCACCCAAGGCGT 3695 Query 5956 -CAAGAATCTTATAGCCATATGTCGCGAGACCCACAACTATTCCACCAGCTCCGAGGGAG 6014 |||| ||||| || || || ||| | ||| | || || || ||||| | ||| Sbjct 3696 GCAAG-ATCTTGTAACCGTACAACGCCAAACCAATCACGATACCGAACGCTCCCAAGGAC 3754 Query 6015 AGAATCCAATATGCGTCGTTACCCATT-TCAGCATTCTTGGAGACCGTACCGGATTTATA 6073 | ||||| || | || | |||||| || | ||||| | |||| | ||| || Sbjct 3755 AAGATCCAGTAGGAATCATCGCCCATTGGCATC-TTCTTCTTAATGCTACCAGCTTTGTA 3813 Query 6074 GATGGCGTAA--ATGGCGGCAAATGGTCCGATTGAATTGGCAACATCATTGGCACCGTGT 6131 | | |||| || ||||| || || |||| || || || |||||||| || ||||| Sbjct 3814 AACG--GTAACGATAGCGGCGAACGGACCGACAGAGTTTGCGACATCATTCGCTCCGTGG 3871 Query 6132 GCGAACGAATCACAACATGCCGTTAAGATCTG--AAGGTACCTCATAGAGTGTTCGGTCT 6189 | ||| ||||| | || || || || | || ||||| |||| || |||||||| Sbjct 3872 GAGAAGGAATCTAAGCAAGCAGTCAAAACTTGCAAAGGT--CTCAAAGCCAATTCGGTCT 3929 Query 6190 TTGTGTCAAATACCTCCGCATTGTCGTGGAT 6220 || ||| ||||| || || || |||||||| Sbjct 3930 TTTCGTCGAATACTTCTGCGTTTTCGTGGAT 3960 >seq6 Length=71040 Score = 102 bits (112), Expect = 1e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 24313 TACTTCTTTAGAACATTCGGTGGATGGAGCATATCAAACTCTTCCGTCGCATCCTTTCCA 24372 |||||||| | || || |||||||| | ||| |||||||| ||||| || || || || Sbjct 36159 TACTTCTTCAACACGTTTGGTGGATGCAACATGTCAAACTCCTCCGTGGCGTCTTTACCG 36100 Query 24373 GCGAAAAGTATGATCGCCTTCTTGCCACCTGGATGATCTGGCAAAAACTTTGTGAGATCA 24432 ||||| | ||||| || ||||| || || ||||| || || ||||||| || | || Sbjct 36099 GCGAACAACATGATTGCTTTCTTCCCTCCCGGATGGTCCGGTAAAAACTCCGTCACGTCG 36040 Query 24433 TACACGATATCTTTGATAATTACCCAACAATCTTCTTCGGTATTATGCTTCGCAATTTC 24491 ||||| | | | | ||| ||||||||||| | || ||| ||||| |||| ||| Sbjct 36039 TACACTTTCCCGTGCAAAATCACCCAACAATCGTTGTCTTTATCGTGCTTTGCAACTTC 35981 >seq51 Length=33875 Score = 86.0 bits (94), Expect = 7e-12 Identities = 191/282 (68%), Gaps = 6/282 (2%) Strand=Plus/Plus Query 14306 AAAGACCTGGTCAATTTCAGTTTGGCAGACTTGAAGCGCTCTATTGCCCATATGGCG--G 14363 ||||| || || |||| |||||||| || | ||| || ||| |||| | | | Sbjct 6731 AAAGAATTGATCCTTTTCTCCTTGGCAGATTTAATGCGTTCGATT--CCATCCGCCATCG 6788 Query 14364 ATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATGCTTGCTTCCATAAGAATCTCAAGG 14423 |||| |||| ||||| || | ||||| |||| | | |||||| | | || | ||| Sbjct 6789 ATGGCTTCAAACCTTCGCAACGAAAAGTTATGTTTTCGTGCTTCAAGAGAAAGTTAAAGT 6848 Query 14424 ATGAAATGAAGGTGGCACAACTG-GCGGCATATGTCGCGGACAAGTCTGCGTACCACCAT 14482 || || || || || ||| || |||| || ||| |||| | || || || ||||| Sbjct 6849 CAGACATCAAAGTTGCGCAATTGAGCGGT-TACGTCTCGGAACATTCAGCCTATCACCAC 6907 Query 14483 GGTGAAGTATCCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTTCAAAC 14542 ||||||| || | ||| ||| ||||| || | || | |||| | || | ||| Sbjct 6908 GGTGAAGCGTCTCTCGCGTCCACAATTGTCAATCTCGCGCAAGACTTCGTTGGGACGAAC 6967 Query 14543 AACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGT 14584 ||||| ||| | | | ||| | |||||||||||||||||| Sbjct 6968 AACATAAACTTGTTAGTCCCGAGCGGTCAATTTGGTACGCGT 7009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596553805819840