Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq120 143 4e-29 seq624 86.0 8e-12 >seq120 Length=18829 Score = 143 bits (158), Expect = 4e-29 Identities = 322/482 (67%), Gaps = 4/482 (1%) Strand=Plus/Plus Query 196376 AACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTT 196435 || || |||||||| ||||| ||||||||||| || || | || || | || || | Sbjct 9807 AATCCAGATGAAGCTGTTGCATATGGTGCGGCTGTCCAAGGTGGGATCTTATCTGGCGAA 9866 Query 196436 GACAATAAT--AACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTC 196493 | || |||| | || | || || ||||| || ||||| || | | ||| Sbjct 9867 GGGGGAGATGAAACGA--AGGACATACTTCTCCTTGACGTAGCACCTTTAACACAAGGTA 9924 Query 196494 TTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTA 196553 ||||||||| ||||| || ||||| ||| | || | || || || || || | Sbjct 9925 TTGAAACAGTTGGTGGGGTCATGACGAAATTGATCCCACGAAATACTGTGATACCAACAA 9984 Query 196554 AGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTAT 196613 | ||| ||| || |||||||| |||||||| | | ||| || || || | Sbjct 9985 AAAAGTCTCAAACTTTCACAACGTATCAAGATAATCAGCAAACTGTAATGATACAGGTTT 10044 Query 196614 ATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGG 196673 ||| || ||| | || | |||||||| || |||| || | || || | || Sbjct 10045 TTGAGGGTGAAAGAGCCATGACGAAGGATAATCACTTACTGGGCAAATTTGAACTCACAT 10104 Query 196674 GGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAA 196733 |||||| ||||||| || ||||| || || ||| | ||| || || || || |||| Sbjct 10105 CGATTCCTCCTGCACCAAGGGGTGTGCCTCAAATTGAGGTTACGTTTGAAATTGATGCAA 10164 Query 196734 ATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGA 196793 | || ||||||||||| || || || || | |||| ||||| || || ||| || Sbjct 10165 ACGGGATTCTAAACGTTGGTGCGGAAGATAAAGGAACTGGTAAATCAGAGAAAATTACGA 10224 Query 196794 TTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGG 196853 | || || || || ||| | |||||| |||| ||||||||||||||||| |||| || | Sbjct 10225 TAACAAACGATAAAGGGAGACTTTCTCAGGAAGAAATTGAACGTATGGTCGAAGAAGCTG 10284 Query 196854 AA 196855 || Sbjct 10285 AA 10286 Score = 127 bits (140), Expect = 3e-24 Identities = 188/256 (73%), Gaps = 9/256 (4%) Strand=Plus/Plus Query 195728 GCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTA 195787 || || |||| |||| |||| || || || |||||||| |||| | ||||| || || Sbjct 9113 GCATATTTCAATGATGCACAGCGTCAAGCAACAAAGGATGCTGGGACAATTGCAGGACTC 9172 Query 195788 AACTGTCT-TAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAA 195846 ||| ||| |||||||||||| || || || ||||| || ||||| |||||||| || || Sbjct 9173 AAC-GTCGCTAGAATTATCAACGAGCCTACTGCGGCCGCCATTGCCTATGGTCTTGATAA 9231 Query 195847 GAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGT 195906 || |||| || ||| || || | ||| | |||||||||||||| || ||||| ||||| Sbjct 9232 GA--AAGG-CG-AGAAGAATAT-TCTTG-TTTTTGATCTCGGTGGAGGCACGTTCGATGT 9285 Query 195907 CTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCA 195966 || || | | |||||| ||| | || ||||| | | || ||| ||||| || Sbjct 9286 TTCCATTTTAACTATTGATAACGGTGTGTTTGAAGTTATTTCAACAAATGGAGATACGCA 9345 Query 195967 TCTAGGTGGTGAAGAT 195982 || |||||| ||||| Sbjct 9346 CCTCGGTGGT-AAGAT 9360 Score = 109 bits (120), Expect = 7e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 195302 ATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTA 195361 || || |||||||| || ||||| |||||||| || || | || |||| || Sbjct 8583 ATCGGAATCGATTTGGGTACTACGTACTCATGCGTGGGAGCATACGTTAATGGGAAAGTT 8642 Query 195362 GAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGAT 195421 || || ||| | ||||||||||| || | | |||||||| |||||||| ||||| ||| Sbjct 8643 GAAATAATCGCAAATGACCAAGGCAATAGGATTACTCCATCTTACGTTGCATTTACGGAT 8702 Query 195422 AATGAACGTCTCGTTGGAGATGCCGCAAAAAATCA 195456 ||||||||||| | |||||||| || |||||||| Sbjct 8703 AATGAACGTCTGATCGGAGATGCTGCGAAAAATCA 8737 >seq624 Length=3705 Score = 86.0 bits (94), Expect = 8e-12 Identities = 183/269 (68%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 || || ||||| ||||||| ||| || | || || ||||| || |||| | ||| Sbjct 1169 ACAGTGCCTGCATACTTCAACGATAGTCAGAGGCAAGCCACAAAAGATGCTGGTCAGATT 1228 Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838 || ||| | | ||| | || ||||||||||| || || || | |||| |||||| Sbjct 1229 GCTGGTATTGAAGTTCTGCGTATCATCAATGAACCGACCGCCGCATCGCTTGCATATGGT 1288 Query 195839 CTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACG 195898 | || |||| ||| | | || ||| | | || || |||||||| || || |||||| Sbjct 1289 TTTGA-GAGAA-AAG--CCA--ATGAAACTATTTTAATTTTTGATCTTGGAGGAGGTACG 1342 Query 195899 TTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGT 195958 |||||||| || | || | ||| | ||| | || || || | ||| | ||| Sbjct 1343 TTTGATGTTTCCATCCTTGAAGTTGGCGATGGAGTGTTTGAGGTTCTCTCAACTTCGGGT 1402 Query 195959 GATACTCATCTAGGTGGTGAAGATTTCGA 195987 ||||| ||||| ||||| || ||||| || Sbjct 1403 GATACACATCTTGGTGGCGATGATTTTGA 1431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657844983092960