Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq330 91.5 2e-13 seq329 91.5 2e-13 seq327 91.5 2e-13 seq114 91.5 2e-13 >seq330 Length=7938 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 || ||||| ||||| |||| ||||||||||||||||| || || || || || || Sbjct 4040 AAGCACGCGAAATCTCTGTGCAAACCTTCATCTCTGGAGATCAACTCATTGGAGAAGGTA 3981 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 | ||| ||||| || ||||| || || ||||| | || || |||| | |||||| Sbjct 3980 AGCCCCGGCATCATGCCTCTCTTCTTGAGCCAGTAGATGGAGCAGAAAGAGCCGGAAAAG 3921 Query 18275 AATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAA 18319 || || || || ||||| |||||||| | || | ||| || ||| Sbjct 3920 AAGATGCCTTCGACGCAGGCGAACGCGACCAAACGTTCGGCGAAA 3876 >seq329 Length=7938 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 || ||||| ||||| |||| ||||||||||||||||| || || || || || || Sbjct 4040 AAGCACGCGAAATCTCTGTGCAAACCTTCATCTCTGGAGATCAACTCATTGGAGAAGGTA 3981 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 | ||| ||||| || ||||| || || ||||| | || || |||| | |||||| Sbjct 3980 AGCCCCGGCATCATGCCTCTCTTCTTGAGCCAGTAGATGGAGCAGAAAGAGCCGGAAAAG 3921 Query 18275 AATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAA 18319 || || || || ||||| |||||||| | || | ||| || ||| Sbjct 3920 AAGATGCCTTCGACGCAGGCGAACGCGACCAAACGTTCGGCGAAA 3876 >seq327 Length=7986 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 || ||||| ||||| |||| ||||||||||||||||| || || || || || || Sbjct 3947 AAGCACGCGAAATCTCTGTGCAAACCTTCATCTCTGGAGATCAACTCATTGGAGAAGGTA 4006 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 | ||| ||||| || ||||| || || ||||| | || || |||| | |||||| Sbjct 4007 AGCCCCGGCATCATGCCTCTCTTCTTGAGCCAGTAGATGGAGCAGAAAGAGCCGGAAAAG 4066 Query 18275 AATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAA 18319 || || || || ||||| |||||||| | || | ||| || ||| Sbjct 4067 AAGATGCCTTCGACGCAGGCGAACGCGACCAAACGTTCGGCGAAA 4111 >seq114 Length=19556 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 || ||||| ||||| |||| ||||||||||||||||| || || || || || || Sbjct 4040 AAGCACGCGAAATCTCTGTGCAAACCTTCATCTCTGGAGATCAACTCATTGGAGAAGGTA 3981 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 | ||| ||||| || ||||| || || ||||| | || || |||| | |||||| Sbjct 3980 AGCCCCGGCATCATGCCTCTCTTCTTGAGCCAGTAGATGGAGCAGAAAGAGCCGGAAAAG 3921 Query 18275 AATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAA 18319 || || || || ||||| |||||||| | || | ||| || ||| Sbjct 3920 AAGATGCCTTCGACGCAGGCGAACGCGACCAAACGTTCGGCGAAA 3876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731852623688800