Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq11 181 3e-40 seq43 143 8e-29 seq2 98.7 3e-15 >seq11 Length=57886 Score = 181 bits (200), Expect = 3e-40 Identities = 583/904 (64%), Gaps = 3/904 (0%) Strand=Plus/Plus Query 155629 TGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGT 155688 ||||||| || ||||| |||| ||| || ||||| ||||||||||| | |||| Sbjct 11728 TGTATTCGACGATCTCTGTACACAAGTTGGACGATTTGATCGTGCCTAAATTTTGTTGGT 11787 Query 155689 TAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTG 155748 | || || | ||| || |||||||| | | ||||||||| | || || |||| || | Sbjct 11788 TTGACTTGCGGTTGCACGCATCCTTAAACAACATGTATGGGTTGCCAGTTTCCACTTGCG 11847 Query 155749 CGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCG 155808 | || ||||| | ||| || | ||||||||||| ||| ||| || ||| Sbjct 11848 CTTCGAGAATAGCAAACCAAAGCTGCTGGGCATTAATTGTCTTCTTGCCCTTGTTTTCTC 11907 Query 155809 ACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGC 155868 || || || | ||||| | | | | || ||||| | || || || || |||| Sbjct 11908 TTTCGTACTTGGTGTACAGAGCTTCGAATTCTTCACCCCAGCATTCGGACAAACCCGGGC 11967 Query 155869 ACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACAT 155928 ||| | ||||| | ||| | ||| | || | || | | ||| || | || Sbjct 11968 ACTCGTTCGGGCACATCAGTGTCCACTTGCCGTTTTCTTCGACTCTTTTCATGAACAAAT 12027 Query 155929 CACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCT 155988 | ||| ||| | | || || | ||| | || | | || || | |||||| |||| Sbjct 12028 CGTTCGTCCACAAGCCGTAAAACAAGTCACGAGCTCTAGCTTCTTCCTTGCCGTGGTTCT 12087 Query 155989 TCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAAC 156048 | | | || | | || || || | || ||| || ||||| || |||||| Sbjct 12088 TTCTCAAATCGAGCCAGTCGAAGATGTCCGAGTGCCATGGTTCGAGATAGATGGCAAAAG 12147 Query 156049 TACCATTCCTCTT---GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 || || | ||| ||| || || || ||||||| || || | ||||| || | | Sbjct 12148 CGCCCTTGCGCTTACCGCCGCCTTGGTCCACATACCTCGCTGTGTCGTTGAACACCCGAA 12207 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 |||| ||||||||||| || ||||| || || || || | |||| |||| | | | Sbjct 12208 GCATCGGAATAATACCGTTCGAAGTACCGTTTGTGCCTCTGATATACGAAGACGTGGCAC 12267 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 | | | ||||| | || |||||||| | | || ||||| ||||| |||| Sbjct 12268 GGATGTCGTGAATGGACAAACCGATACCACCGGCGGACTTGGAAATGCACGCGCACTCCT 12327 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAAC 156285 | | || | | | ||||||||||| || || || | ||| | | | | ||||||| Sbjct 12328 TCAACGTGTCGTAGATACCTTCAATGGAGTCTTCCTTCATGCAAATCAAAAAGCACGAGG 12387 Query 156286 TTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACT 156345 | || ||||| ||||| ||||||||||| | || || | ||||| | | | Sbjct 12388 AGAGCTGCGGTCGAGGTGTACCAGCGTTGAACAAGGTTGGCGACGCATGCGTCATCCAAC 12447 Query 156346 TATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGA 156405 | ||||| | ||| || || || ||| || | || | ||| |||| || Sbjct 12448 GCTCAGACAACATGTGGTAGGTTTCAATAGCCTTTTCGATATCCTTCTTGTGGATACCGA 12507 Query 156406 TAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAA 156465 | || || |||||| |||| ||||| |||||||| |||| | || || || |||| | Sbjct 12508 TGGATACTCTCATCAACATGTGCTGTGGACGCTCGACAACCTTACCGTCTATGCGCAACA 12567 Query 156466 GGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGTTGTAAT 156525 ||||| |||||||| |||||| || || || || ||| | ||| ||||||| ||| Sbjct 12568 AGTATGAGCGTTCCAAAGTTTTGAAACCAAAGTAGTCATAATCAAAGTCACGGTCGTAGA 12627 Query 156526 CAAT 156529 |||| Sbjct 12628 CAAT 12631 >seq43 Length=35883 Score = 143 bits (158), Expect = 8e-29 Identities = 203/280 (73%), Gaps = 8/280 (3%) Strand=Plus/Plus Query 302571 GTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGC 302630 ||||||||| ||| | ||||| | |||||| ||||| ||| || ||||| || || Sbjct 20199 GTCTTCCATCGCCTTAACCAAACGTCTCTGAATGTAACCGGTTTCGGAGGTTTTCACCGC 20258 Query 302631 TGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-A 302689 ||||| || ||||| | || |||||||| || |||||||| | |||| ||| ||| | Sbjct 20259 GGTATCGATGAGACCTTCGCGGCCACCCATGGCGTGGAAGAAAAATTCTTGCGG-CGTCA 20317 Query 302690 GCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CGAA-TCGTCGAACT 302746 ||| | | | ||| |||| |||||||| || | ||| || |||| ||||| || Sbjct 20318 ACCCTCTCAAGTACGAGTTCTCGACGAAACCTCGAGACTCTGGACCGAAATCGTC---CT 20374 Query 302747 TGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGT 302806 ||| ||||||||||| | | |||| | | | || || || ||||| || || || |||| Sbjct 20375 TGGAAAAGTGTGGCAAGCTTCTGTCCACGAAACCATACGGTATACGTTTACCTTCTACGT 20434 Query 302807 TCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAA 302846 | ||||| || | ||||| |||||||||||| || || Sbjct 20435 TTTGCTGACCGACGCACGCGCACATCTGCGAAATGTTCAA 20474 >seq2 Length=85876 Score = 98.7 bits (108), Expect = 3e-15 Identities = 156/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 233276 CCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTTGAC 233335 |||||| || || ||||| ||||||||||| || | ||| | ||||||||| || Sbjct 37041 CCGTGACTGATAATGCAATCGCGTTCCATTTCCCCGAAACGTAAACCACCATCTCGCGAA 37100 Query 233336 CTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATTAATT 233395 | ||| | | | |||||||||||||| |||||| | | ||| | | |||| Sbjct 37101 CGACCTTCCATAGGTTGACGAGTTAAAATTTGGACTGGACCTCGGCCGCGAGAGTGAATT 37160 Query 233396 TTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGACCAATAAATAGTTCTGCG 233455 ||||| | ||||| ||||||| | | |||||| |||||| ||||| | || |||| Sbjct 37161 TTATCGTCCACCATGTGCTTCAAACGCTGATAATACGTCGGACCGATAAAGATTTGTGCG 37220 Query 233456 TGTAATTGTTCCCCAGATTCACCGCTGTATAAAACTTCATTACC 233499 | | || | ||| | | ||| ||||||| ||||| ||||| Sbjct 37221 TCGAGTTTTCTCCCGGTGTGACCATTGTATAATACTTCGTTACC 37264 Score = 84.2 bits (92), Expect = 6e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 252504 CGGGTAAGATAGAACATATGCTGTCTTATCCATCCTATTATCATAATTTGTAACATACAT 252563 ||||||| | | || ||| | | ||||||| || | | ||||||||||| ||||| Sbjct 38063 CGGGTAAAACAACACGTATCCGAGCGTATCCATTCTCGTTTGGTAATTTGTAACGTACAT 38122 Query 252564 ACCAAGCGCCTGCTTTCCCATAGCACTCTGGTAAGTATTTCTGGGAGACTGATTGTTTTC 252623 || | ||| ||||| |||||||| ||||| || ||||| || ||||| |||| || Sbjct 38123 CCCCATCGCTTGCTTACCCATAGCCGATTGGTACGTGTTTCTTGGCGACTGGTTGTGATC 38182 Query 252624 CGGGAAAGGAATGCATGATGCTACAACACCGAAGATAGTGCTTGGGTGAATTTCACAGTG 252683 || || ||||| || || || || | || | ||||||||||||||||| Sbjct 38183 GGGAAACGGAATAATCGAAGCACAAATGCCTAGAATCATCGACGGGTGAATTTCACAGTG 38242 Query 252684 ACTGTA 252689 | |||| Sbjct 38243 AGTGTA 38248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471777659469766