Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq11 116 5e-20 seq70 87.8 2e-11 >seq11 Length=57886 Score = 116 bits (128), Expect = 5e-20 Identities = 111/140 (79%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 1628463 CGTCCACAGTGCGTAAAAGAGGTCGCGCGCCC--GGTTCTCCTCCTTGCCGTGGTTCTTT 1628520 |||||||| ||||||| | ||| || || | | |||| |||||||||||||||||| Sbjct 12032 CGTCCACAAGCCGTAAAACAAGTCACGAGCTCTAGCTTCT--TCCTTGCCGTGGTTCTTT 12089 Query 1628521 TTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCG 1628580 | | ||||||||||||| ||||| | |||||| || || || ||| |||||| ||| Sbjct 12090 CTCAAATCGAGCCAGTCGAAGATGTCCGAGTGCCATGGTTCGAGATAGATGGCAAAAGCG 12149 Query 1628581 CCCTTGCGCTTGCCGCCGCC 1628600 ||||||||||| |||||||| Sbjct 12150 CCCTTGCGCTTACCGCCGCC 12169 Score = 100 bits (110), Expect = 3e-15 Identities = 180/263 (68%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||| || || | ||| |||||||| || || || ||||| || | | ||||| || Sbjct 12171 TGGTCCACATACCTCGCTGTGTCGTTGAACACCCGAAGCATCGGAATAATACCGTTCGAA 12230 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 ||||| ||||| | || | | ||| || | | ||| || || ||| Sbjct 12231 GTACCGTTTGTGCCTCTGATATACGAAGACGTGGCACGGATGTCGTGAATGGACAAACCG 12290 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || ||||| |||||||| ||| |||||||| || | |||||||||||| || || Sbjct 12291 ATACCACCGGCGGACTTGGAAATGCACGCGCACTCCTTCAACGTGTCGTAGATACCTTCA 12350 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || ||||| |||||||| | | ||||||||| ||| ||||| | | || || Sbjct 12351 ATGGAGTCTTCCTTCATGCAAATCAAAAAGCACGAGGAGAGCTGCGGTCGAGGTGTACCA 12410 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGC 1630328 |||||||| | || |||| ||| Sbjct 12411 GCGTTGAACAAGGTTGGCGACGC 12433 >seq70 Length=28206 Score = 87.8 bits (96), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 5/198 (3%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 ||||||||||||||||||| ||||| ||| | | ||| ||| | || | |||| Sbjct 6637 CCTTCGTCGCGACTGATCAACTCGTTAGAAAATGTCAAGCCTTTCATCAACCCTCTCTTC 6696 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || | |||||||||||||||||||||||| |||||| || || || ||| || || Sbjct 6697 TTTAACCAAAAGATGGCGCAGAAACTGCCGCTGAAAAAAATCCCTTCCACGCACGCGAAC 6756 Query 869300 CCGATGAGCCGCTCGGCAAAGGT-GTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 |||| | || ||||| || | | ||||| | ||||| ||||||||||| Sbjct 6757 CCGACTAAACGTTCGGCGAACCTCGCCGAGG----GGGATTCAATCCATTTCATCGCCCA 6812 Query 869359 GTCGGCCTTTTTCCTCAC 869376 || || || || |||| Sbjct 6813 ATCCGCTTTCTTTTTCAC 6830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106965387001406