Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq277 120 3e-22 seq11 113 4e-20 >seq277 Length=9178 Score = 120 bits (132), Expect = 3e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||||||||||||||| || || || || ||||| || ||||| || |||||||| Sbjct 8208 AAGATCCAAGACAAAGAAGGGATCCCCCCGGACCAACAGCGGTTGATATTCGCCGGGAAG 8149 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || |||| || | ||| || | ||||| ||||| |||||||||||||| || ||| Sbjct 8148 CAATTGGAAGACGGGCGAACGTTGGCGGATTACAACATCCAAAAGGAATCGACGCTGCAC 8089 Query 24908 TTGGTGTTGCGATTGCGCGGAGGC 24931 || ||| |||| ||||| || ||| Sbjct 8088 TTAGTGCTGCGTTTGCGAGGCGGC 8065 >seq11 Length=57886 Score = 113 bits (124), Expect = 4e-20 Identities = 518/814 (64%), Gaps = 21/814 (3%) Strand=Plus/Plus Query 139121 TGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGAT 139180 |||||||||| || || | |||||| || | |||||||| |||||||||||||| | Sbjct 11728 TGTATTCGACGATCTCTGTACACAAGTTGGACGATTTGATCGTGCCTAAATTTTGTTGGT 11787 Query 139181 TGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTG 139240 | || ||||| || ||||| || | | ||| || || |||||||||||||||| | Sbjct 11788 TTGACTTGCGGTTGCACGCATCCTTAAACAACATGTATGGGTTGCCAGTTTCCACTTGCG 11847 Query 139241 TCTCTATAAT-GAATTTGAAC--AAGTCCCTAGCTTGTATTTGAC-----GCACGTAAAG 139292 || | ||| | | ||| ||| || | || ||| | || | | | Sbjct 11848 CTTCGAGAATAGCA----AACCAAAGCTGCTGGGCATTAATTGTCTTCTTGCCCTT---G 11900 Query 139293 TTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAG 139352 || || | |||||||| ||| || | |||||| |||||| || || || | Sbjct 11901 TT-TTCTCTTTCGTACTTGGTGTACAGAGCTTCGAATTCTTCACCCCAGCATTCGGACAA 11959 Query 139353 ATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCAT 139412 | | | |||| || || ||||| || | ||| |||||| | | ||| | |||| Sbjct 11960 ACCCGGGCACTCGTTCGGGCACATCAGTGTCCACTTGCCGTTTTCTTCGACTCTTTTCAT 12019 Query 139413 GAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACC 139472 ||||| ||| ||||||| || | | ||| || || || | |||||| || Sbjct 12020 GAACAAATCGTTCGTCCACAAGCCGTAAAACAAGTCACGAGCTCTAGCTTCTTCCTTGCC 12079 Query 139473 CATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGAT 139532 ||| | ||| | || | || || | ||| | |||||||||||| |||||||| Sbjct 12080 GTGGTTCTTTCTCAAATCGAGCCAGTCGAAGATGTCCGAGTGCCATGGTTCGAGATAGAT 12139 Query 139533 GGCCATTGCGCCTTTCCGTTT---GCCACCTTGATCGACGTGTCGTACAGCATTATTGAA 139589 ||| | ||||| || || || ||| ||||| || || | | | | | ||||| Sbjct 12140 GGCAAAAGCGCCCTTGCGCTTACCGCCGCCTTGGTCCACATACCTCGCTGTGTCGTTGAA 12199 Query 139590 TACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTT 139649 || || | |||||| | |||| ||| || ||||| |||| | ||| || Sbjct 12200 CACCCGAAGCATCGGAATAATACCGTTCGAAGTACCGTTTGTGCCTCTGAT-ATACGAAG 12258 Query 139650 GCG-AGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAA 139708 || || |||| ||| || | | ||||| || ||| | | ||||| || | Sbjct 12259 ACGTGGCACGGATGTCGTGAATGGACAAACCGATACCACCGGCGGACTTGGAAATGCACG 12318 Query 139709 CGCAATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAA 139768 |||| || || || ||||| |||||| ||| ||| |||| ||| | || || Sbjct 12319 CGCACTCCTTCAACGTGTCGTAGATACCTTCAATGGAGTCTTCCTTCATGCAAATCAAAA 12378 Query 139769 AGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCG 139828 |||| || || || |||||| | || || || |||| || || ||| |||| Sbjct 12379 AGCACGAGGAGAGCTGCGGTCGAGGTGTACCAGCGTTGAACAAGGTTGGCGACGCATGCG 12438 Query 139829 TGAACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGT 139888 | | | | | |||| || | ||| ||||| || || | | |||||| | || Sbjct 12439 TCATCCAACGCTCAGACAACATGTGGTAGGTTTCAATAGCCTTTTCGATATCCTTCTTGT 12498 Query 139889 GGATACCGACAGAGACTCGCATCAGCATATGTTG 139922 ||||||||| || |||| ||||| ||| || || Sbjct 12499 GGATACCGATGGATACTCTCATCAACATGTGCTG 12532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449885688961040