Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq11 131 3e-24 seq563 113 7e-19 seq70 89.7 8e-12 >seq11 Length=57886 Score = 131 bits (144), Expect = 3e-24 Identities = 123/155 (79%), Gaps = 4/155 (3%) Strand=Plus/Plus Query 2071860 CATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCC--GGTTCTCCTCC 2071917 ||| |||| ||| |||||||| ||||||||| | || || || | | |||| ||| Sbjct 12017 CATGAACAAATCGTTCGTCCACAAGCCGTAAAACAAGTCACGAGCTCTAGCTTCT--TCC 12074 Query 2071918 TTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGG 2071977 ||||||||||||||| ||| ||||||||||||| || ||| | |||||| || || || Sbjct 12075 TTGCCGTGGTTCTTTCTCAAATCGAGCCAGTCGAAGATGTCCGAGTGCCATGGTTCGAGA 12134 Query 2071978 TAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||| |||||| |||||||||||||| |||||||| Sbjct 12135 TAGATGGCAAAAGCGCCCTTGCGCTTACCGCCGCC 12169 >seq563 Length=4372 Score = 113 bits (124), Expect = 7e-19 Identities = 169/239 (71%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 |||||||| |||||||| || || ||||||||||| |||||| |||||| ||| |||| Sbjct 3273 TTGGTGACCGCCTTGGTCCCTTCGGAGACGGCGTGTTTGGCCAATTCGCCCGGCAAGATC 3332 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGG---TGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | || |||| || ||||| || | | | || ||| || |||||| | Sbjct 3333 AATCGAACGGACGTTTGGATTTCTCTAGACGTCACGGTCGGCTT---CTTGTTGTATCTG 3389 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 |||| | |||| || || |||| |||| |||||||||| || ||||||||| Sbjct 3390 GCCAACTTGGCGGCTTCTGTCGCGATCTTTTCGAAGATGTCGTTGATGAAGGAGTTCATG 3449 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 || ||||| ||| ||||||||| ||| |||||||| ||||| | |||||||| Sbjct 3450 ATGCTCATCGCCTTGGAGGAGATGCCGGTGTCCGGGTGCACTTGCTTCAAGACCTTGTA 3508 >seq70 Length=28206 Score = 89.7 bits (98), Expect = 8e-12 Identities = 178/263 (68%), Gaps = 3/263 (1%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||||||||||||||| ||||| ||| | ||| ||| | || | |||| Sbjct 6637 CCTTCGTCGCGACTGATCAACTCGTTAGAAAATGTCAAGCCTTTCATCAACCCTCTCTTC 6696 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || | |||||||||||| ||||||||||| |||||| || || || ||| || || Sbjct 6697 TTTAACCAAAAGATGGCGCAGAAACTGCCGCTGAAAAAAATCCCTTCCACGCACGCGAAC 6756 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 ||||| | || ||||| || | || | | | ||||| ||||||||||| Sbjct 6757 CCGACTAAACGTTCGGCGAACCTCGCCGAGGGGGAT---TCAATCCATTTCATCGCCCAA 6813 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 || || || || |||| | || | ||| | || || | ||| | | ||||| Sbjct 6814 TCCGCTTTCTTTTTCACGGTTGGAATCGTATGAATCGCTCCAAACAAATTTCTCTTCTGA 6873 Query 794581 ACCGGGTCCTTGACGTAGGTGTC 794603 | |||||| || ||||| || || Sbjct 6874 ATCGGGTCTTTCACGTACGTCTC 6896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916021098679802