Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq120 129 4e-24 >seq120 Length=18829 Score = 129 bits (142), Expect = 4e-24 Identities = 393/600 (66%), Gaps = 28/600 (5%) Strand=Plus/Minus Query 281315 TCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCG 281374 ||| | ||||||| ||||||| | ||| | ||||||| || | ||| | ||| || Sbjct 10297 TCTGCGAATTCTTCAGCTTCTTCGACCATACGTTCAATTTCTTCCTGAGAAAGTCTCCCT 10238 Query 281375 CGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACA 281434 || || || || ||||| |||| ||||| ||| |||||| | ||| || Sbjct 10237 TTATCGTTTGTTATCGTAATTTTCTCTGATTTACCAGTTCCTTTATCTTCCGCACCAACG 10178 Query 281435 TTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGA 281494 || ||||| || || ||||| | ||||| || || ||||||||||| || || || | Sbjct 10177 TTTAGAATCCCGTTTGCATCAATTTCAAACGTAACCTCAATTTGAGGCACACCCCTTGGT 10118 Query 281495 GCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTT 281554 ||||| || ||| | | | |||| | ||||| | |||||| || || | | Sbjct 10117 GCAGGAGGAATCGATGTGAGTTCAAATTTGCCCAGTAAGTGATTATCCTTCGTCATGGCT 10058 Query 281555 CGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT---TGATTATCTGAATAAGTTGTA 281611 | ||||||||| |||| || | | | ||||||| ||||||||| ||| ||||| Sbjct 10057 CTTTCACCCTCAAAAACCTGTA---TCATTACAGTTTGCTGATTATCTTGATACGTTGTG 10001 Query 281612 AATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTC----TATCAATAATATTGGTCA 281666 || | | || || ||||| || || || |||| |||||| || |||| Sbjct 10000 AA-AGTTTGAGACTTTTTTGTTGGTATCACAGTATTTCGTGGGATCAAT----TTCGTCA 9946 Query 281667 TAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT 281726 | | |||||| ||||||| | ||| | | | ||| | || |||| || | || | Sbjct 9945 TGACCCCACCAACTGTTTCAATACCTTGTGTTAAAGGTGCTACGTCAAGGAGAAGTATGT 9886 Query 281727 --TTTGAAGTTTTTCAT----CAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCAC 281780 || | |||||| | || | | | ||| || | |||| | ||| |||| Sbjct 9885 CCTTCG-----TTTCATCTCCCCCTTCGCCAGATAAG-ATCCCACCTTGGACAGCCGCAC 9832 Query 281781 CATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT 281840 ||||||||||||||||||| ||||| ||| || | ||| || |||| ||| ||| Sbjct 9831 CATATGCAACAGCTTCATCTGGATTCACACCTTTGCTCGGTTCCTTGCCATCGAAGTAAT 9772 Query 281841 TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 281900 | | ||||| || ||||| || | | ||| || || ||||| |||||||||| Sbjct 9771 CTTTTAAAAGTTCCTGAACTTTAGGGATCCTTGTTGAGCCACCGACTAAAACAATTTCAT 9712 Score = 125 bits (138), Expect = 5e-23 Identities = 125/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 282667 TCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATA 282726 ||||||||| |||| ||| || || ||||| || ||||||||| | ||||||| Sbjct 8792 TCTACCAATCAATCTTTTAGCGTCGAAAATGGTTCGTGTTGGATTAGAGGTGGCTTGATT 8733 Query 282727 TTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGT 282786 ||| || |||||||| |||||| |||| | || ||||||| ||| || |||||||| | Sbjct 8732 TTTCGCAGCATCTCCGATCAGACGTTCATTATCCGTAAATGCAACGTAAGATGGAGTAAT 8673 Query 282787 GCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATT 282828 | ||| ||||| ||||| || || ||||||||||| ||||| Sbjct 8672 CCTATTGCCTTGGTCATTTGCGATTATTTCAACTTTCCCATT 8631 Score = 100 bits (110), Expect = 2e-15 Identities = 141/197 (72%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 282257 TCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTC 282316 |||| || |||| | |||||| || || ||||| | |||||||| ||| | |||| Sbjct 9303 TCAATAGTTAAAATGGAAACATCGAACGTGCCTCCACCGAGATCAAAAACAAGAATATTC 9244 Query 282317 ATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 282376 | || | ||| | |||||||||||||| |||| || || ||||| || || || Sbjct 9243 TTCTC---GCCTT---TCTTATCAAGACCATAGGCAATGGCGGCCGCAGTAGGCTCGTTG 9190 Query 282377 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 282436 |||||||| || || || || |||||| | || ||||| || || ||||| | ||| Sbjct 9189 ATAATTCTAGCGACGTTGAGTCCTGCAATTGTCCCAGCATCCTTTGTTGCTTGACGCTGT 9130 Query 282437 GAATCGTTAAAATATGC 282453 | ||| || |||||||| Sbjct 9129 GCATCATTGAAATATGC 9113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740526415150668