Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq11 134 3e-26 seq51 84.2 5e-11 >seq11 Length=57886 Score = 134 bits (148), Expect = 3e-26 Identities = 320/482 (66%), Gaps = 9/482 (2%) Strand=Plus/Minus Query 110667 AAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATAT 110726 || ||| |||| | || || |||| ||| | | || ||||||||||| || | ||| Sbjct 12238 AACGGTACTTCGAACGGTATTATTCCGATGCTTCGGGTGTTCAACGACACAGCGAGGTAT 12179 Query 110727 GTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCAT 110783 ||| | ||||| || |||| | || ||| | ||||| |||||||||||||| ||||| Sbjct 12178 GTGGACCAAGGCGGCGGTAAGCGCAAGGGCGCTTTTGCCATCTATCTCGAACCATGGCAC 12119 Query 110784 TCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCA 110843 || || || || || | | || | | || || || || |||||| ||||| Sbjct 12118 TCGGACATCTTCGACTGGCTCGATTTGAGAAAGAACCACGGCAAGGAAGAAGCTAGAGCT 12059 Query 110844 CGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAAT 110903 ||||| || ||||| | |||||| ||||| ||||||||| | || ||||||| Sbjct 12058 CGTGACTTGTTTTACGGCTTGTGGACGAACGATTTGTTCATGAAAAGAGTCGAAGAAAAC 11999 Query 110904 GGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAA 110963 |||| |||| | || ||||| || | | || ||| | || || | || || Sbjct 11998 GGCAAGTGGACACTGATGTGCCCGAACGAGTGCCCGGGTTTGTCCGAATGCTGGGGTGAA 11939 Query 110964 GAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACA---AATT 111020 || || |||| || ||| || || |||| |||| |||| |||| | |||| Sbjct 11938 GAATTCGAAGCTCTGTACACCAAGTACGAAAGAGAAAACAAG---GGCAAGAAGACAATT 11882 Query 111021 CCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTAT 111080 || || | |||||||| || || ||| | ||||| |||||||| | || || Sbjct 11881 AATGCCCAGCAGCTTTGGTTTGCTATTCTCGAAGCGCAAGTGGAAACTGGCAACCCATAC 11822 Query 111081 ATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAG 111140 || |||| ||| ||| || ||||| || || ||| |||||||| || || || Sbjct 11821 ATGTTGTTTAAGGATGCGTGCAACCGCAAGTCAAACCAACAAAATTTAGGCACGATCAAA 11762 Query 111141 TC 111142 || Sbjct 11761 TC 11760 >seq51 Length=33875 Score = 84.2 bits (92), Expect = 5e-11 Identities = 207/305 (68%), Gaps = 22/305 (7%) Strand=Plus/Plus Query 279803 GAAGAATTTATTGATAAAGAACTGATCCATTTTTCTAATTAT--GATGTTCAT-CGTTCT 279859 || ||||| || |||||||| |||||| |||||| || ||| || || ||||| Sbjct 6716 GATGAATTCATCAATAAAGAATTGATCC--TTTTCTCCTTGGCAGAT-TTAATGCGTTCG 6772 Query 279860 ATTCCTCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTC 279919 ||||| || ||||| || |||||||| || || || |||| || || ||| Sbjct 6773 ATTCCATCCGCCATCGATGGCTTCAAACCTTCGCAACGAAAAGTTATGTTTTCGTGCTTC 6832 Query 279920 AAAAGAAAATTGGTAAAG---GAAATTCGTGTTGCTCAGTT-AGCAGGTTATGTTTCAGA 279975 || ||||| || |||| || || ||||| || || ||| ||||| || || || Sbjct 6833 AAGAGAAAGTT---AAAGTCAGACATCAAAGTTGCGCAATTGAGC-GGTTACGTCTCGGA 6888 Query 279976 ACATGCAGGTTATCATCACGGTGAAGCGTCTCT----TCAAGGTGCTATTGTAGGTCTTG 280031 |||| ||| ||||| ||||||||||||||||| || | | ||||| ||| | Sbjct 6889 ACATTCAGCCTATCACCACGGTGAAGCGTCTCTCGCGTCCA----CAATTGTCAATCTCG 6944 Query 280032 CCCAAGATTTTATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTT 280091 | ||||| || | | | |||||| |||| || | || | |||||||||||| Sbjct 6945 CGCAAGACTTCGTTGGGACGAACAACATAAACTTGTTAGTCCCGAGCGGTCAATTTGGTA 7004 Query 280092 CTCGT 280096 | ||| Sbjct 7005 CGCGT 7009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186780593609398