Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq11 165 1e-35 seq51 102 1e-16 seq330 96.9 4e-15 seq329 96.9 4e-15 seq327 96.9 4e-15 seq114 96.9 4e-15 seq112 96.9 4e-15 >seq11 Length=57886 Score = 165 bits (182), Expect = 1e-35 Identities = 561/858 (65%), Gaps = 31/858 (4%) Strand=Plus/Plus Query 118710 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 118769 ||||| || |||| || || || | ||| || || |||||| || | || || Sbjct 11685 GCGATGGATGCCAAGTTGCAAACGGCGGTTTCTTCTGGTGAAGTGTATTCGACGATCTCT 11744 Query 118770 GTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 118829 || |||||||| || || || ||||| || || | ||| |||||||| ||| ||| Sbjct 11745 GTACACAAGTTGGACGATTTGATCGTGCCTAAATTTTGTTGGTTTGACTTGCGGTTGCAC 11804 Query 118830 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 118889 |||||||| | | ||||||||| | || || ||| ||| | | ||||||||| | Sbjct 11805 GCATCCTTAAACAACATGTATGGGTTGCCAGTTTCCACTTGCGCTTCGAGAATAGCAAAC 11864 Query 118890 CAGACATCGGCAGCTGG-CAC-AGTGGCGTTGGCTCGCCC-------CTCTTCCTCGTAC 118940 || | || ||||| || | | | || || |||| ||||| |||||| Sbjct 11865 CAAA-----GCTGCTGGGCATTAATTGTCTT--CTTGCCCTTGTTTTCTCTT--TCGTAC 11915 Query 118941 TTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCT 119000 || ||||| || ||||| || ||||||||| | || || | || || || | Sbjct 11916 TTGGTGTACAGAGCTTCGAATTCTTCACCCCAGCATTCGGACAAACCCGGGCACTCGTTC 11975 Query 119001 GGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATC 119060 ||||| | || | ||| | || || || || | |||||||| | || || Sbjct 11976 GGGCACATCAGTGTCCACTTGCCGTTTTCTTCGACTCTTTTCATGAACAAATCGTTCGTC 12035 Query 119061 CAGAGCGCCG-AGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAA 119119 || | |||| | || | || ||| | ||||||||| | || || || | ||| Sbjct 12036 CACAA-GCCGTAAAACAAGTCACGAGCTCTAGCTTCTTCCTTGCCGTGGTTCTTTCTCAA 12094 Query 119120 CTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTT 119179 || | |||| | ||| |||| |||||| ||||| || || | || | | ||||| Sbjct 12095 ATCGAGCCAGTCGAAGATGTCCGAGTGCCATGGTTCGAGATAGATGGCAAAAGCGCCCTT 12154 Query 119180 ACGACGACCA--GCCT-GGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGG 119236 || ||| |||| ||| ||||||||||| ||| |||| || || |||||||| || Sbjct 12155 GCGCTTACCGCCGCCTTGGTCCACATACCTCGCTGTGTCGTTGAACACCCGAAGCATCGG 12214 Query 119237 AATGATACCATCGGATTGGCCATTTGT-CCCCCGA-ATACG-AGACTTATTGGCTCTGAC 119293 ||| ||||| | || || ||||| || | || ||||| |||| |||| | || Sbjct 12215 AATAATACCGTTCGAAGTACCGTTTGTGCCTCTGATATACGAAGAC---GTGGCACGGAT 12271 Query 119294 ATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAG 119353 ||||| ||| || ||| ||||| || || |||| || || |||||||||| | | Sbjct 12272 GTCGTGAATGGACAAACCGATACCACCGGCGGACTTGGAAATGCACGCGCACTCCTTCAA 12331 Query 119354 ACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACAT 119413 || ||||||| || || || ||||| |||| | || | ||||| || | Sbjct 12332 CGTGTCGTAGATACCTTCAATGGAGTCTTCCTTCATGCAAATCAAAAAGCACGAGGAGAG 12391 Query 119414 TTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTG 119473 || || | ||||||||||||||||| | ||||| | ||| || | | | || | Sbjct 12392 CTGCGGTCGAGGTGTACCAGCGTTGAACAAGGTTGGCGACGCATGCGTCATCCAACGCTC 12451 Query 119474 GGACATCTTGTCGTAGGTCTCCA-AGACGGCGGGAATGTCTTCCCCGTGAATACCGATCG 119532 |||| | ||| |||||| || | || | | || || | | ||| |||||||| | Sbjct 12452 AGACAACATGTGGTAGGTTTCAATAGCCTTTTCG-ATATCCTTCTTGTGGATACCGATGG 12510 Query 119533 AGACCCGCATAAACATGT 119550 | || | ||| ||||||| Sbjct 12511 ATACTCTCATCAACATGT 12528 >seq51 Length=33875 Score = 102 bits (112), Expect = 1e-16 Identities = 197/285 (69%), Gaps = 12/285 (4%) Strand=Plus/Minus Query 179082 ACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATTGTTTGAACCCATGTAGTC 179141 |||||| ||||||||||| | || | | | || || ||||| | || | | |||| Sbjct 7009 ACGCGTACCAAATTGACCGCTCGGGACTAACAAGTTTATGTTGTTCGTCCCAACGAAGTC 6950 Query 179142 ATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAAGCCGACTT 179201 | || | |||||||| || |||||| || |||||||||| || || || || | Sbjct 6949 TTGCGCGAGATTGACAATTGTGGACGCGAGAGACGCTTCACCGTGGTGATAGGCTGAATG 6890 Query 179202 GTCCGCCACATATGCCGC-CAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGA 179260 |||| || || |||| ||| ||||| || || || || ||| | || | | || Sbjct 6889 TTCCGAGACGTA-ACCGCTCAATTGCGCAACTTTGATGTCTGACTTTAACTTTCTCTTGA 6831 Query 179261 AGCACGCATACATCACCTTTCTTTGTGAAGGCTTGAGGCCGTCGGCCATGTGCGCGATG- 179319 |||||| | |||| || |||| ||| ||||| |||| ||| ||| ||| ||| |||| Sbjct 6830 AGCACGAAAACATAACTTTTCGTTGCGAAGGTTTGAAGCCATCG---ATG-GCG-GATGG 6776 Query 179320 ----GAACGCTTCAAGTCTGCCAAGCTGAAATTGACCAAGTCTTT 179360 |||||| | || ||||||||| |||| || ||| ||||| Sbjct 6775 AATCGAACGCATTAAATCTGCCAAGGAGAAAAGGATCAATTCTTT 6731 >seq330 Length=7938 Score = 96.9 bits (106), Expect = 4e-15 Identities = 299/454 (66%), Gaps = 8/454 (2%) Strand=Plus/Minus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| || || || |||||||| |||||||| ||||| || | |||| ||| ||||| Sbjct 4323 ATATTCACCGACACGCTTCTCAAAGAAGTTCGTCTTGCCTTGCAAGGAGATCAATTCCAT 4264 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTG-GC-ACTCCAATCTGTTTGAGGAGA 129844 | ||||| |||||| | ||| | ||| || || | || | ||| ||| | Sbjct 4263 CCAGTCAAACGGGTTCGCGGTGTT--ATATTCCTTCGCGAAGCCGAGCTGCGAGAGCAAG 4206 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904 |||| | || ||||| ||||| || |||| | |||| ||||||||||| || | Sbjct 4205 TGATCGGCAACATACTCGATGTAATCTCTCATCATGTCGGCGTTCATACCGACAAGCGCA 4146 Query 129905 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGAT-GGC 129963 ||||| | ||| || | | ||| |||||||||| || || ||||| || || Sbjct 4145 CATGGCAACGCATCGCACACAAACTCCTTCTCAATCTCAACCGCTTCGGTAACAATCTTT 4086 Query 129964 GTGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAG-TTCCACGGCAAACT 130022 | ||| | || || || | ||| || | || | || ||| || || | Sbjct 4085 CTCAAT-TTTTCTTCACCCGGCGTGTTGTTTAACATAGTGTAAAGCAAGCAC-GCGAAAT 4028 Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082 | ||| | ||| || || | |||||| | ||||| |||||| || || ||||| | Sbjct 4027 CTCTGTGCAAACCTTCATCTCTGGAGATCAACTCATTGGAGAAGGTAAGCCCCGGCATCA 3968 Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142 || | |||||| | |||| | || | || || ||||| || |||||||| || || | Sbjct 3967 TGCCTCTCTTCTTGAGCCAGTAGATGGAGCAGAAAGAGCCGGAAAAGAAGATGCCTTCGA 3908 Query 130143 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 130176 | || |||||||| | | ||| || || || || Sbjct 3907 CGCAGGCGAACGCGACCAAACGTTCGGCGAAAGA 3874 >seq329 Length=7938 Score = 96.9 bits (106), Expect = 4e-15 Identities = 299/454 (66%), Gaps = 8/454 (2%) Strand=Plus/Minus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| || || || |||||||| |||||||| ||||| || | |||| ||| ||||| Sbjct 4323 ATATTCACCGACACGCTTCTCAAAGAAGTTCGTCTTGCCTTGCAAGGAGATCAATTCCAT 4264 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTG-GC-ACTCCAATCTGTTTGAGGAGA 129844 | ||||| |||||| | ||| | ||| || || | || | ||| ||| | Sbjct 4263 CCAGTCAAACGGGTTCGCGGTGTT--ATATTCCTTCGCGAAGCCGAGCTGCGAGAGCAAG 4206 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904 |||| | || ||||| ||||| || |||| | |||| ||||||||||| || | Sbjct 4205 TGATCGGCAACATACTCGATGTAATCTCTCATCATGTCGGCGTTCATACCGACAAGCGCA 4146 Query 129905 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGAT-GGC 129963 ||||| | ||| || | | ||| |||||||||| || || ||||| || || Sbjct 4145 CATGGCAACGCATCGCACACAAACTCCTTCTCAATCTCAACCGCTTCGGTAACAATCTTT 4086 Query 129964 GTGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAG-TTCCACGGCAAACT 130022 | ||| | || || || | ||| || | || | || ||| || || | Sbjct 4085 CTCAAT-TTTTCTTCACCCGGCGTGTTGTTTAACATAGTGTAAAGCAAGCAC-GCGAAAT 4028 Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082 | ||| | ||| || || | |||||| | ||||| |||||| || || ||||| | Sbjct 4027 CTCTGTGCAAACCTTCATCTCTGGAGATCAACTCATTGGAGAAGGTAAGCCCCGGCATCA 3968 Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142 || | |||||| | |||| | || | || || ||||| || |||||||| || || | Sbjct 3967 TGCCTCTCTTCTTGAGCCAGTAGATGGAGCAGAAAGAGCCGGAAAAGAAGATGCCTTCGA 3908 Query 130143 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 130176 | || |||||||| | | ||| || || || || Sbjct 3907 CGCAGGCGAACGCGACCAAACGTTCGGCGAAAGA 3874 >seq327 Length=7986 Score = 96.9 bits (106), Expect = 4e-15 Identities = 299/454 (66%), Gaps = 8/454 (2%) Strand=Plus/Plus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| || || || |||||||| |||||||| ||||| || | |||| ||| ||||| Sbjct 3664 ATATTCACCGACACGCTTCTCAAAGAAGTTCGTCTTGCCTTGCAAGGAGATCAATTCCAT 3723 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTG-GC-ACTCCAATCTGTTTGAGGAGA 129844 | ||||| |||||| | ||| | ||| || || | || | ||| ||| | Sbjct 3724 CCAGTCAAACGGGTTCGCGGTGTT--ATATTCCTTCGCGAAGCCGAGCTGCGAGAGCAAG 3781 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904 |||| | || ||||| ||||| || |||| | |||| ||||||||||| || | Sbjct 3782 TGATCGGCAACATACTCGATGTAATCTCTCATCATGTCGGCGTTCATACCGACAAGCGCA 3841 Query 129905 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGAT-GGC 129963 ||||| | ||| || | | ||| |||||||||| || || ||||| || || Sbjct 3842 CATGGCAACGCATCGCACACAAACTCCTTCTCAATCTCAACCGCTTCGGTAACAATCTTT 3901 Query 129964 GTGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAG-TTCCACGGCAAACT 130022 | ||| | || || || | ||| || | || | || ||| || || | Sbjct 3902 CTCAAT-TTTTCTTCACCCGGCGTGTTGTTTAACATAGTGTAAAGCAAGCAC-GCGAAAT 3959 Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082 | ||| | ||| || || | |||||| | ||||| |||||| || || ||||| | Sbjct 3960 CTCTGTGCAAACCTTCATCTCTGGAGATCAACTCATTGGAGAAGGTAAGCCCCGGCATCA 4019 Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142 || | |||||| | |||| | || | || || ||||| || |||||||| || || | Sbjct 4020 TGCCTCTCTTCTTGAGCCAGTAGATGGAGCAGAAAGAGCCGGAAAAGAAGATGCCTTCGA 4079 Query 130143 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 130176 | || |||||||| | | ||| || || || || Sbjct 4080 CGCAGGCGAACGCGACCAAACGTTCGGCGAAAGA 4113 >seq114 Length=19556 Score = 96.9 bits (106), Expect = 4e-15 Identities = 299/454 (66%), Gaps = 8/454 (2%) Strand=Plus/Minus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| || || || |||||||| |||||||| ||||| || | |||| ||| ||||| Sbjct 4323 ATATTCACCGACACGCTTCTCAAAGAAGTTCGTCTTGCCTTGCAAGGAGATCAATTCCAT 4264 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTG-GC-ACTCCAATCTGTTTGAGGAGA 129844 | ||||| |||||| | ||| | ||| || || | || | ||| ||| | Sbjct 4263 CCAGTCAAACGGGTTCGCGGTGTT--ATATTCCTTCGCGAAGCCGAGCTGCGAGAGCAAG 4206 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904 |||| | || ||||| ||||| || |||| | |||| ||||||||||| || | Sbjct 4205 TGATCGGCAACATACTCGATGTAATCTCTCATCATGTCGGCGTTCATACCGACAAGCGCA 4146 Query 129905 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGAT-GGC 129963 ||||| | ||| || | | ||| |||||||||| || || ||||| || || Sbjct 4145 CATGGCAACGCATCGCACACAAACTCCTTCTCAATCTCAACCGCTTCGGTAACAATCTTT 4086 Query 129964 GTGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAG-TTCCACGGCAAACT 130022 | ||| | || || || | ||| || | || | || ||| || || | Sbjct 4085 CTCAAT-TTTTCTTCACCCGGCGTGTTGTTTAACATAGTGTAAAGCAAGCAC-GCGAAAT 4028 Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082 | ||| | ||| || || | |||||| | ||||| |||||| || || ||||| | Sbjct 4027 CTCTGTGCAAACCTTCATCTCTGGAGATCAACTCATTGGAGAAGGTAAGCCCCGGCATCA 3968 Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142 || | |||||| | |||| | || | || || ||||| || |||||||| || || | Sbjct 3967 TGCCTCTCTTCTTGAGCCAGTAGATGGAGCAGAAAGAGCCGGAAAAGAAGATGCCTTCGA 3908 Query 130143 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 130176 | || |||||||| | | ||| || || || || Sbjct 3907 CGCAGGCGAACGCGACCAAACGTTCGGCGAAAGA 3874 >seq112 Length=19657 Score = 96.9 bits (106), Expect = 4e-15 Identities = 191/281 (68%), Gaps = 4/281 (1%) Strand=Plus/Plus Query 13513 GACTTGTGCGTAATCCCCCGAGGCACCGGTCGTGATGTATTCCTTTCCATAGATGATCTC 13572 ||||||| | |||| |||||||| || || || | || ||| || |||| | ||| Sbjct 1078 GACTTGTTGGAAATCGCCCGAGGCGCCAGTGGTAACGTCTTCGGCGCCGAAGATCAACTC 1137 Query 13573 TTCCGCCGCGCGACCACCGAGAGCCACGATGATTTGTTGGGTGAGATACTCTTTCGTGTA 13632 ||| || | ||||| || | ||| || ||||| | ||| ||| | | | ||| Sbjct 1138 TTCGGCAACACGACCGCCCATAGCAACCGCCATTTGGTTCTCGAGGTACGATCTGGAGTA 1197 Query 13633 CATAGCGGATTCGG--CGTTATCCTCCGAGGGTTGGAAGAATGTCACACCACCCGCGTCC 13690 || | ||||| || | | | | ||| |||||| |||| ||||||||| | Sbjct 1198 CAATCCTGATTCTAATCGCTCTTCGCTCGGGGC--GAAGAAGGTCAAACCACCCGCAGCG 1255 Query 13691 CCTCGCGGAATGATTGAAACCTTTCGAACTGTGTCGTACCCAGGTAAAGTAGCGCCGACG 13750 |||| |||| ||| || | || ||| | ||||| | || | ||||||||| Sbjct 1256 CCTCTTGGAACGATAGAGATTTTGGCAACCGGATCGTATTCCGGCATCAACGCGCCGACG 1315 Query 13751 ATGGCGTGCCCAGCTTCGTGATACGCCACGAGTTCCTTCTT 13791 |||||||| ||||||||||| ||||| ||||||| |||||| Sbjct 1316 ATGGCGTGGCCAGCTTCGTGGTACGCTACGAGTTTCTTCTT 1356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618418826928080