Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq11 170 2e-37 seq51 102 1e-16 seq6 102 1e-16 seq330 91.5 2e-13 seq329 91.5 2e-13 seq327 91.5 2e-13 seq114 91.5 2e-13 seq112 84.2 3e-11 >seq11 Length=57886 Score = 170 bits (188), Expect = 2e-37 Identities = 559/861 (65%), Gaps = 21/861 (2%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| ||||||| ||| | || |||||||||| || | | || || || | Sbjct 12535 CCACAGCACATGTTGATGAGAGTATCCATCGGTATCCACAAGAAGGATATCGAAAAGGCT 12476 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | || || ||| ||| | |||| | || | | | || || | |||||| | ||| Sbjct 12475 ATTGAAACCTACCACATGTTGTCTGAGCGTTGGATGACGCATGCGTCGCCAACCTTGTTC 12416 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || ||||||||||| |||| || | ||| ||||| | || || ||||| ||| Sbjct 12415 AACGCTGGTACACCTCGACCGCAGCTCTCCTCGTGCTTTTTGATTTGCATGAAGGAAGAC 12356 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || || | |||||||| | || | | |||||| ||| || || |||| || || Sbjct 12355 TCCATTGAAGGTATCTACGACACGTTGAAGGAGTGCGCGTGCATTTCCAAGTCCGCCGGT 12296 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATC-TCGTAT-TC-GGGGGACA 104518 ||||| || || ||| || || | | ||| | || |||||| || | || ||| Sbjct 12295 GGTATCGGTTTGTCCATTCACGACATCCGTGCC---ACGTCTTCGTATATCAGAGGCACA 12239 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 || ||| || | ||||||||||| |||||||| || || |||| ||||||| | ||| Sbjct 12238 AACGGTACTTCGAACGGTATTATTCCGATGCTTCGGGTGTTCAACGACACAGCGAGGTAT 12179 Query 104579 GTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 104635 || | |||| || || || ||||| || | || ||||||| || ||||||||| Sbjct 12178 GTGGACCAAGGCGGCGGTAAGCGCAAGGGCGCTTTTGCCATCTATCTCGAACCATGGCAC 12119 Query 104636 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC 104695 |||| ||| | || | || || ||| | ||||| || | || || || | Sbjct 12118 TCGGACATCTTCGACTGGCTCGATTTGAGAAAGAACCACGGCAAGGAAGAAGCTAGAGCT 12059 Query 104696 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 104755 || || | || | || | |||| ||| | |||||||| ||||| || || | Sbjct 12058 CGTGACTTGTTTTACGGCTTGTGGACGAACGATTTGTTCATGAAAAGAGTCGAAGAAAAC 11999 Query 104756 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCG-ATGCCGTGGGTGA 104814 ||||| ||| | || | || || || || || ||| | |||| |||| | |||||| Sbjct 11998 GGCAAGTGGACACTGATGTGCCCGAACGAGTGCCCGGGTTTGTCCGAATGCTG-GGGTGA 11940 Query 104815 GGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGT--- 104871 || || ||||| || ||||| |||||||| |||| || | ||| | Sbjct 11939 AGAATTCGAAGCTCTGTACACCAAGTACGAAAGAGAAAACAAGGGCAAGAAGACAATTAA 11880 Query 104872 --GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929 ||||| || | ||| ||||||||| | | ||| || ||||| | ||| Sbjct 11879 TGCCCAGCAGC-----TTTGGTTTGCTATTCTCGAAGCGCAAGTGGAAACTGGCAACCCA 11825 Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989 |||||| | | || || || || |||| ||| || ||| | ||||| || |||| Sbjct 11824 TACATGTTGTTTAAGGATGCGTGCAACCGCAAGTCAAACCAACAAAATTTAGGCACGATC 11765 Query 104990 AAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 105049 || ||||| | |||||||| ||| | |||| || ||| || || || || Sbjct 11764 AAATCGTCCAACTTGTGTACAGAGATCGTCGAATACACTTCACCAGAAGAAACCGCCGTT 11705 Query 105050 TGTAACCTCGCATCAATCGCT 105070 || ||| | ||||| |||||| Sbjct 11704 TGCAACTTGGCATCCATCGCT 11684 >seq51 Length=33875 Score = 102 bits (112), Expect = 1e-16 Identities = 160/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 168475 ACGCGTACCAAACTGACCACACGGCTC-AAGAAGATTGATATTGTTTGAACCCATGTAGT 168533 |||||||||||| ||||| | ||| | || ||| || || ||||| | || | | ||| Sbjct 7009 ACGCGTACCAAATTGACCGCTCGGGACTAACAAGTTT-ATGTTGTTCGTCCCAACGAAGT 6951 Query 168534 CATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCGTGGTGGTACGCACTCT 168593 | | ||| | |||||||| ||| ||||||||| ||||||||||||| || || | Sbjct 6950 CTTGCGCGAGATTGACAATTGTGGACGCGAGAGACGCTTCACCGTGGTGATAGGCTGAAT 6891 Query 168594 TCTCTGCGACAAATGCCGC-CAACTGCGCCACTTTCATCTCATCCTTGAGATTCTTGTGG 168652 || | ||| | |||| ||| ||||| ||||| || || ||| | || | | | Sbjct 6890 GTTCCGAGACGTA-ACCGCTCAATTGCGCAACTTTGATGTCTGACTTTAACTTTCTCTTG 6832 Query 168653 AAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATC 168696 ||||| | ||||||| || ||||||||||| |||| ||||| Sbjct 6831 AAGCACGAAAACATAACTTTTCGTTGCGAAGGTTTGAAGCCATC 6788 >seq6 Length=71040 Score = 102 bits (112), Expect = 1e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 158812 GAAATTGCGAAGCATAATACCGAAGAAGATTGTTGGGTAATTATCAAAGATATCGTGTAT 158871 ||| |||| ||||| ||| || | ||||||||||| ||| | | | | ||||| Sbjct 35981 GAAGTTGCAAAGCACGATAAAGACAACGATTGTTGGGTGATTTTGCACGGGAAAGTGTAC 36040 Query 158872 GATCTCACAAAGTTTTTGCCAGATCATCCAGGTGGCAAGAAGGCGATCATGCTTTTTGCT 158931 || | || ||||||| || || ||||| || || ||||| || |||||| | || || Sbjct 36041 GACGTGACGGAGTTTTTACCGGACCATCCGGGAGGGAAGAAAGCAATCATGTTGTTCGCC 36100 Query 158932 GGAAAGGATGCGACGGAAGAGTTTGATATGCTCCATCCACCGAATGTTCTAAAGAAGTA 158990 || || || || ||||| |||||||| ||| | |||||||| || || | |||||||| Sbjct 36101 GGTAAAGACGCCACGGAGGAGTTTGACATGTTGCATCCACCAAACGTGTTGAAGAAGTA 36159 >seq330 Length=7938 Score = 91.5 bits (100), Expect = 2e-13 Identities = 291/442 (66%), Gaps = 22/442 (5%) Strand=Plus/Plus Query 94814 TCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGC 94873 |||| || || || || || || |||||||| || || || |||||| | || || |||| Sbjct 3893 TCGCGTTCGCCTGCGTCGAAGGCATCTTCTTTTCCGGCTCTTTCTGCTCCATCTACTGGC 3952 Query 94874 TCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACG 94933 |||||||| |||| | ||||| || || ||||||||| ||| | ||||| | || | Sbjct 3953 TCAAGAAGAGAGGCATGATGCCGGGGCTTACCTTCTCCAATGAGTTGATCTCCAGAGATG 4012 Query 94934 AGGGACTCCACCAAGAGTTTGCGGTGGAACTT--TTCAAATTATTGCGTATTAAACCA-A 94990 | || | ||| ||| || || ||| ||| || | | || | |||||| | | Sbjct 4013 AAGGTTTGCACAGAGATTTCGC-GTG---CTTGCTTTACACTA-----TGTTAAACAACA 4063 Query 94991 CGAC---TGA--GACTATTCA-TTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAAGGAT 95044 || | ||| | ||| | ||||||| ||||| |||||||||||||| | | Sbjct 4064 CGCCGGGTGAAGAAAAATTGAGAAAGATTGTTACCGAAGCGGTTGAGATTGAGAAGGAGT 4123 Query 95045 TCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAAATGTCTGAAT 95104 | | | ||||| | ||||| || || |||||||||| | || | ||| || | Sbjct 4124 TTGTGTGCGATGCGTTGCCATGTGCGCTTGTCGGTATGAACGCCGACATGATGAGAGATT 4183 Query 95105 ATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTCCAA--TTTGGAA 95162 | || |||||||| | ||| ||| | |||| |||| | | | || | || Sbjct 4184 ACATCGAGTATGTTGCCGATCACTTGCTCTCGCAGCTCGGCTT--CGCGAAGGAATATAA 4241 Query 95163 CTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTT 95222 | || ||| || ||||||| ||||| || | | | || ||||| |||||||| Sbjct 4242 CACCGCGAACCCGTTTGACTGGATGGAATTGATCTCCTTGCAAGGCAAGACGAACTTCTT 4301 Query 95223 CGAAAAGAGGGTTGGGGACTAT 95244 || ||| | || || || ||| Sbjct 4302 TGAGAAGCGTGTCGGTGAATAT 4323 >seq329 Length=7938 Score = 91.5 bits (100), Expect = 2e-13 Identities = 291/442 (66%), Gaps = 22/442 (5%) Strand=Plus/Plus Query 94814 TCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGC 94873 |||| || || || || || || |||||||| || || || |||||| | || || |||| Sbjct 3893 TCGCGTTCGCCTGCGTCGAAGGCATCTTCTTTTCCGGCTCTTTCTGCTCCATCTACTGGC 3952 Query 94874 TCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACG 94933 |||||||| |||| | ||||| || || ||||||||| ||| | ||||| | || | Sbjct 3953 TCAAGAAGAGAGGCATGATGCCGGGGCTTACCTTCTCCAATGAGTTGATCTCCAGAGATG 4012 Query 94934 AGGGACTCCACCAAGAGTTTGCGGTGGAACTT--TTCAAATTATTGCGTATTAAACCA-A 94990 | || | ||| ||| || || ||| ||| || | | || | |||||| | | Sbjct 4013 AAGGTTTGCACAGAGATTTCGC-GTG---CTTGCTTTACACTA-----TGTTAAACAACA 4063 Query 94991 CGAC---TGA--GACTATTCA-TTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAAGGAT 95044 || | ||| | ||| | ||||||| ||||| |||||||||||||| | | Sbjct 4064 CGCCGGGTGAAGAAAAATTGAGAAAGATTGTTACCGAAGCGGTTGAGATTGAGAAGGAGT 4123 Query 95045 TCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAAATGTCTGAAT 95104 | | | ||||| | ||||| || || |||||||||| | || | ||| || | Sbjct 4124 TTGTGTGCGATGCGTTGCCATGTGCGCTTGTCGGTATGAACGCCGACATGATGAGAGATT 4183 Query 95105 ATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTCCAA--TTTGGAA 95162 | || |||||||| | ||| ||| | |||| |||| | | | || | || Sbjct 4184 ACATCGAGTATGTTGCCGATCACTTGCTCTCGCAGCTCGGCTT--CGCGAAGGAATATAA 4241 Query 95163 CTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTT 95222 | || ||| || ||||||| ||||| || | | | || ||||| |||||||| Sbjct 4242 CACCGCGAACCCGTTTGACTGGATGGAATTGATCTCCTTGCAAGGCAAGACGAACTTCTT 4301 Query 95223 CGAAAAGAGGGTTGGGGACTAT 95244 || ||| | || || || ||| Sbjct 4302 TGAGAAGCGTGTCGGTGAATAT 4323 >seq327 Length=7986 Score = 91.5 bits (100), Expect = 2e-13 Identities = 291/442 (66%), Gaps = 22/442 (5%) Strand=Plus/Minus Query 94814 TCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGC 94873 |||| || || || || || || |||||||| || || || |||||| | || || |||| Sbjct 4094 TCGCGTTCGCCTGCGTCGAAGGCATCTTCTTTTCCGGCTCTTTCTGCTCCATCTACTGGC 4035 Query 94874 TCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACG 94933 |||||||| |||| | ||||| || || ||||||||| ||| | ||||| | || | Sbjct 4034 TCAAGAAGAGAGGCATGATGCCGGGGCTTACCTTCTCCAATGAGTTGATCTCCAGAGATG 3975 Query 94934 AGGGACTCCACCAAGAGTTTGCGGTGGAACTT--TTCAAATTATTGCGTATTAAACCA-A 94990 | || | ||| ||| || || ||| ||| || | | || | |||||| | | Sbjct 3974 AAGGTTTGCACAGAGATTTCGC-GTG---CTTGCTTTACACTA-----TGTTAAACAACA 3924 Query 94991 CGAC---TGA--GACTATTCA-TTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAAGGAT 95044 || | ||| | ||| | ||||||| ||||| |||||||||||||| | | Sbjct 3923 CGCCGGGTGAAGAAAAATTGAGAAAGATTGTTACCGAAGCGGTTGAGATTGAGAAGGAGT 3864 Query 95045 TCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAAATGTCTGAAT 95104 | | | ||||| | ||||| || || |||||||||| | || | ||| || | Sbjct 3863 TTGTGTGCGATGCGTTGCCATGTGCGCTTGTCGGTATGAACGCCGACATGATGAGAGATT 3804 Query 95105 ATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTCCAA--TTTGGAA 95162 | || |||||||| | ||| ||| | |||| |||| | | | || | || Sbjct 3803 ACATCGAGTATGTTGCCGATCACTTGCTCTCGCAGCTCGGCTT--CGCGAAGGAATATAA 3746 Query 95163 CTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTT 95222 | || ||| || ||||||| ||||| || | | | || ||||| |||||||| Sbjct 3745 CACCGCGAACCCGTTTGACTGGATGGAATTGATCTCCTTGCAAGGCAAGACGAACTTCTT 3686 Query 95223 CGAAAAGAGGGTTGGGGACTAT 95244 || ||| | || || || ||| Sbjct 3685 TGAGAAGCGTGTCGGTGAATAT 3664 >seq114 Length=19556 Score = 91.5 bits (100), Expect = 2e-13 Identities = 291/442 (66%), Gaps = 22/442 (5%) Strand=Plus/Plus Query 94814 TCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGC 94873 |||| || || || || || || |||||||| || || || |||||| | || || |||| Sbjct 3893 TCGCGTTCGCCTGCGTCGAAGGCATCTTCTTTTCCGGCTCTTTCTGCTCCATCTACTGGC 3952 Query 94874 TCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACG 94933 |||||||| |||| | ||||| || || ||||||||| ||| | ||||| | || | Sbjct 3953 TCAAGAAGAGAGGCATGATGCCGGGGCTTACCTTCTCCAATGAGTTGATCTCCAGAGATG 4012 Query 94934 AGGGACTCCACCAAGAGTTTGCGGTGGAACTT--TTCAAATTATTGCGTATTAAACCA-A 94990 | || | ||| ||| || || ||| ||| || | | || | |||||| | | Sbjct 4013 AAGGTTTGCACAGAGATTTCGC-GTG---CTTGCTTTACACTA-----TGTTAAACAACA 4063 Query 94991 CGAC---TGA--GACTATTCA-TTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAAGGAT 95044 || | ||| | ||| | ||||||| ||||| |||||||||||||| | | Sbjct 4064 CGCCGGGTGAAGAAAAATTGAGAAAGATTGTTACCGAAGCGGTTGAGATTGAGAAGGAGT 4123 Query 95045 TCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAAATGTCTGAAT 95104 | | | ||||| | ||||| || || |||||||||| | || | ||| || | Sbjct 4124 TTGTGTGCGATGCGTTGCCATGTGCGCTTGTCGGTATGAACGCCGACATGATGAGAGATT 4183 Query 95105 ATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTCCAA--TTTGGAA 95162 | || |||||||| | ||| ||| | |||| |||| | | | || | || Sbjct 4184 ACATCGAGTATGTTGCCGATCACTTGCTCTCGCAGCTCGGCTT--CGCGAAGGAATATAA 4241 Query 95163 CTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTT 95222 | || ||| || ||||||| ||||| || | | | || ||||| |||||||| Sbjct 4242 CACCGCGAACCCGTTTGACTGGATGGAATTGATCTCCTTGCAAGGCAAGACGAACTTCTT 4301 Query 95223 CGAAAAGAGGGTTGGGGACTAT 95244 || ||| | || || || ||| Sbjct 4302 TGAGAAGCGTGTCGGTGAATAT 4323 >seq112 Length=19657 Score = 84.2 bits (92), Expect = 3e-11 Identities = 276/420 (66%), Gaps = 18/420 (4%) Strand=Plus/Plus Query 9601 TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTC 9660 |||||| || | ||||||||||| || || | | ||||| || |||||||| | || Sbjct 1710 TGTTTCCTT--CGAAACCATCCATTTCAGTGAGCAACTGGTTGATCGTTTGTTCTCTCTC 1767 Query 9661 ATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCA 9718 || ||| | || ||| || | || || ||| || ||||||||||||||||| Sbjct 1768 GTCGTTCCC--GCCGCCCATACCGGAACCACGCTGCCGCCCGACGGCATCAATCTCATCG 1825 Query 9719 ATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACG 9774 |||||||| ||||| || || |||| || |||||| | || | || || Sbjct 1826 ATGAAGACAATGCACGGTGCCTTCGATTTC----GCTTTTTCAAACAAGTCTCTGACGCG 1881 Query 9775 CTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGG 9834 |||||| || || || |||| || || || | | || | || || ||| || Sbjct 1882 AGAGGCGCCAACGCCGACGAACAATTCAACGAACTCGGACGCAGCGCAGGAGAAGAACGG 1941 Query 9835 GACATTAGATTCACCCGCAA-TGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTAC 9893 ||| | ||||||||||| || || || | | || ||||||||| ||||| ||| || Sbjct 1942 CACACCCGCTTCACCCGCAACTGCCTTGGCCAATAA-AGTCTTACCAGTACCCGGCGGAC 2000 Query 9894 CCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC-ACTTCCAAAGTATCTCTCAGGTTGC 9952 | | | | ||| ||| ||||| || || | || | ||| | || || | | Sbjct 2001 CGACCAACAAACAACCCTTTGGGATCTTCGCACCTAATTGC-GTGTACTTATCTGGGTTC 2059 Query 9953 TTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCG 10012 || | || || |||| ||||| |||||| |||||| | |||| || |||| ||| Sbjct 2060 TTCAAGAAGTCGACAACTTCTTGCAATTCCAACTTGGCGCCTTCAACGCCGGCAACGTCG 2119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583245358170320