Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq120 165 2e-35 seq624 140 1e-27 seq64 98.7 3e-15 seq362 91.5 4e-13 seq51 86.0 2e-11 >seq120 Length=18829 Score = 165 bits (182), Expect = 2e-35 Identities = 425/644 (66%), Gaps = 4/644 (1%) Strand=Plus/Plus Query 350168 AAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAA 350227 |||| ||| || |||||| | |||||||| ||||| || ||| | || || |||||||| Sbjct 9699 AAAAGTCAAATCGATGAAATTGTTTTAGTCGGTGGCTCAACAAGGATCCCTAAAGTTCAG 9758 Query 350228 CAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAA 350287 | | || || | || ||||||| ||||| | | | |||||||||||| Sbjct 9759 GAACTTTTAAAAGATTACTTCGATGGCAAGGAACCGAGCAAAGGTGTGAATCCAGATGAA 9818 Query 350288 GCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAATAAGAGTTCTAAA 350347 ||||||||||||||||| ||||| || | || |||||||| | | | | || Sbjct 9819 GCTGTTGCATATGGTGCGGCTGTCCAAGGTGGGATCTTATCTGGCGAAGGGGGAGATGAA 9878 Query 350348 ATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGT 350407 | | || || | || || || ||| | || | | | || | ||||| |||| Sbjct 9879 ACGAAGGACATACTTCTCCTTGACGTAGCACCTTTAACACAAGGTATTGAAACAGTTGGT 9938 Query 350408 GAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAAAAAGTCCCAAACT 350467 | || ||||| | || || |||||| | |||| ||||||||||| |||||| Sbjct 9939 GGGGTCATGACGAAATTGATCCCACGAAATACTGTGATACCAACAAAAAAGTCTCAAACT 9998 Query 350468 TTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATTTGAAGGTGAACGT 350527 || | || | | ||||||||||| | | |||| || || || ||||| |||||| | Sbjct 9999 TTCACAACGTATCAAGATAATCAGCAAACTGTAATGATACAGGTTTTTGAGGGTGAAAGA 10058 Query 350528 GCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAGTGAAATTCCACCAATG 350587 || || || |||||| | ||| || ||||| || | ||||| || Sbjct 10059 GCCATGACGAAGGATAATCACTTACTGGGCAAATTTGAACTCACATCGATTCCTCCTGCA 10118 Query 350588 CCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAAATGGTATTTTAAAT 350647 || || || || ||||| ||||| || | || || |||||| |||| || ||| |||| Sbjct 10119 CCAAGGGGTGTGCCTCAAATTGAGGTTACGTTTGAAATTGATGCAAACGGGATTCTAAAC 10178 Query 350648 GTTACCGCAGTTGAAAAATCAAGTGGTAAA--AGTAGTAAGGTAGAAATTACTAATGATA 350705 ||| || | || ||| || ||||||| || || || || || || || |||| Sbjct 10179 GTTGGTGCGGAAGATAAAGGAACTGGTAAATCAG-AGAAAATTA-CGATAACAAACGATA 10236 Query 350706 AATCTAGACTTTCAAAAGAAGATATTGAGAAAATGACACAAGATGCCGAATCATATGCTA 350765 || |||||||| | ||||| ||||| ||| |||| || ||| || || Sbjct 10237 AAGGGAGACTTTCTCAGGAAGAAATTGAACGTATGGTCGAAGAAGCTGAAGAATTCGCAG 10296 Query 350766 AGGAAGATGAAGAATTTAGAGAGCGTGTTAATTCTAAAAATAGT 350809 |||| || || || ||| |||||| || |||| | |||||| Sbjct 10297 AGGAGGACAAAAAAATTAAAGAGCGAATTGATTCGAGGAATAGT 10340 Score = 131 bits (144), Expect = 5e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 349196 ACCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGAT 349255 |||| || ||||||||||| |||||||| || || || || | | | |||| Sbjct 8577 ACCGTGATCGGAATCGATTTGGGTACTACGTACTCATGCGTGGGAGCATACGTTAATGGG 8636 Query 349256 CGTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTT 349315 || |||||||| |||||||| ||||| || || | || ||||| |||||||||||| Sbjct 8637 AAAGTTGAAATAATCGCAAATGACCAAGGCAATAGGATTACTCCATCTTACGTTGCATTT 8696 Query 349316 ACCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAA 349375 || || | ||| ||| |||| || ||| |||| ||||||||||| | ||||||||| | Sbjct 8697 ACGGATAATGAACGTCTGATCGGAGATGCTGCGAAAAATCAAGCCACCTCTAATCCAACA 8756 Query 349376 AATACGGTTTTTGATGCTAAGCGACTTATTGGTAGAA 349412 || |||| || ||||| || | |||||||||| Sbjct 8757 CGAACCATTTTCGACGCTAAAAGATTGATTGGTAGAA 8793 Score = 109 bits (120), Expect = 2e-18 Identities = 459/719 (64%), Gaps = 18/719 (3%) Strand=Plus/Minus Query 182828 CATTCTTTCTATTTCATCTTTAGAAAGATGACCTGCATCATTTGTAATTACTACATTACT 182887 ||| | ||| ||||| || | |||||| ||| ||| ||||| || || || || Sbjct 10271 CATACGTTCAATTTCTTCCTGAGAAAGTCTCCCTTTATCGTTTGTTATCG-TAATTTTCT 10213 Query 182888 ---AGTTACTCCAGTTGATTTTTCAAGTGCGCTAACATTTAAAATACCATTAGAGTCAAC 182944 | |||| ||||| ||| || || | ||| |||| ||| || || | |||| Sbjct 10212 CTGATTTAC--CAGTTCCTTTATCTTCCGCACCAACGTTTAGAATCCCGTTTGCATCAAT 10155 Query 182945 ATCAAATGATACTTCAATCTGTGGAACACCTCGTGGCATTGGTGGAATTCCAGTTAAAGT 183004 ||||| | || ||||| || || ||||| | ||| || ||||| || | Sbjct 10154 TTCAAACGTAACCTCAATTTGAGGCACACCCCTTGGTGCAGGAGGAATCGATGTGAGTTC 10095 Query 183005 AAATTCACCTAATTTATTATTATCTTTAGTTCTTGCTCTCTCGCCTTCATATACTTGAAT 183064 ||||| || | | | |||||| || || | ||||| || || ||| | || || || Sbjct 10094 AAATTTGCCCAGTAAGTGATTATCCTTCGTCATGGCTCTTTCACCCTCAAAAACCTGTAT 10035 Query 183065 AGTAACTGCTGGCTGATTATCACTATAAGTAGAAAAAACTTGCTTTTTATTAATAGGAAT 183124 | || | | |||||||||| ||| || | ||| ||| || || | || || Sbjct 10034 CATTACAGTTTGCTGATTATCTTGATACGTTGTGAAAGTTTGAGACTTTTTTGTTGGTAT 9975 Query 183125 AGTTGAATTTCGCGGAA-CAATTACAGTCATTACTTCTCTGGCAGTTTCTAATCCTAATG 183183 | |||||| || | ||||| | ||||| || | | | ||||| | ||| || Sbjct 9974 CACAGTATTTCGTGGGATCAATTTC-GTCATGACCCCACCAACTGTTTCAATACCTTGTG 9916 Query 183184 ATAATGGTGCTACATCTAGTAATAATAAATCTGATGTTTTATCTGATTTAATATCACTTA 183243 ||| |||||||| || || | | || || |||| |||| || || Sbjct 9915 TTAAAGGTGCTACGTCAAGGAGAAGTATGTCCTTCGTTTCATCTCCCCCTTCGCCAGATA 9856 Query 183244 AAATTGCAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAA-----TTGA 183298 | || || |||| ||||| |||||||||||||||||||||||||| || | ||| Sbjct 9855 AGATCCCACCTTGGACAGCCGCACCATATGCAACAGCTTCATCTGGATTCACACCTTTGC 9796 Query 183299 ACGAGATAATTCTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCT 183358 || ||| ||||||| || | ||| | | || |||| ||| || || || Sbjct 9795 TCG-----GTTCCTTGCCATCGAAGTAATCTTTTAAAAGTTCCTGAACTTTAGGGATCCT 9741 Query 183359 AGTTGAACCACCGACTAATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTT 183418 ||||| ||||||||||| || | ||||||||| | |||||| | | | ||| | Sbjct 9740 TGTTGAGCCACCGACTAAAACAATTTCATCGATTTGACTTTTCTTCAAACCAGCATCCTC 9681 Query 183419 TAAAACTTTTTCAACAGGGTCCATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAA 183478 | | |||| ||||| |||| ||||| || | ||| | |||||| || || Sbjct 9680 CATCGCCTTTTTGACAGGCCCCATCGTTTTGAGGAAGAGATCATTGTTTAACTCCTCAAA 9621 Query 183479 TCTTGCTCTAGTTAAAGATGaaaaaaaGTCAATACCATTATATAAGGAATCAATTTCAA 183537 || |||||||| | || | |||| || ||||| | ||| | || || || |||| Sbjct 9620 CCTGGCTCTAGTGAGAGGCTCAGAAAAATCGATACCGTCATAGAGAGATTCTATCTCAA 9562 >seq624 Length=3705 Score = 140 bits (154), Expect = 1e-27 Identities = 212/296 (72%), Gaps = 8/296 (3%) Strand=Plus/Plus Query 349599 CAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAA 349658 |||| ||| | ||||| ||||| || || || || || || ||| ||| | || | Sbjct 1149 CAGTCACTAAGGCTGTGATTACAGTGCCTGCATACTTCAACGATAGTCAGAGGCAAGCCA 1208 Query 349659 CAAAAGATGCTGG-CAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACT 349717 ||||||||||||| ||| ||||| || | | ||||| | || || |||||||| || Sbjct 1209 CAAAAGATGCTGGTCAG-ATTGCTGGTATTGAAGTTCTGCGTATCATCAATGAACCGACC 1267 Query 349718 GCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATT 349777 || ||| | |||||||||| |||| | || || |||| ||| |||| | ||| Sbjct 1268 GCCGCATCGCTTGCATATGGTTTTGAGAGAAA-AG---CCAATGAAAC--TATTTTAATT 1321 Query 349778 TTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTT 349837 |||||| | || || ||||| |||||||| || | || | ||| || ||| | ||| Sbjct 1322 TTTGATCTTGGAGGAGGTACGTTTGATGTTTCCATCCTTGAAGTTGGCGATGGAGTGTTT 1381 Query 349838 GAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCG 349893 || ||| ||||| | |||||||||||||||||||| || |||||||| || || Sbjct 1382 GAGGTTCTCTCAACTTCGGGTGATACACATCTTGGTGGCGATGATTTTGACAAACG 1437 >seq64 Length=29840 Score = 98.7 bits (108), Expect = 3e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 ||||| | ||||| | ||| | || | || ||||||||||| || || ||||| | Sbjct 4668 CCACCTCTCAATCTCAAAACCAAGTGCAACGTGGACTCTTTTTGGATGTTGTAATCCGCG 4727 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | |||| ||| ||||| | |||||| || ||||| || | || ||||| || || || Sbjct 4728 AGAGTTCTCCCGTCTTCTAATTGTTTACCGGCAAAAATCAATCGCTGCTGGTCCGGCGGG 4787 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || || || |||||||| ||||| || || || |||| || || | || ||| Sbjct 4788 ATGCCCTCCTTGTCTTGAATTTTCGCTTTCACGTTGTCGATCGTGTCCGAAGACTCGACT 4847 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTT 140722 || || || | || || || || | ||||| Sbjct 4848 TCGAGAGTGATGGTTTTCCCCGTCAAAGTTTT 4879 >seq362 Length=7115 Score = 91.5 bits (100), Expect = 4e-13 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 378199 AAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACT 378258 |||||||| |||||||| || || |||| || || || || |||| |||||| ||| Sbjct 5553 AAATCTTCCAATGCTTTCATCAGACGTCTGGACATGTATCCGGTTTCGGCAGTTTTTACT 5612 Query 378259 GCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAGG-AGT 378317 |||||||| | |||||| | | || |||| | |||||||| |||||||| || ||| Sbjct 5613 GCAGTATCGACTAAACCTTCTCTCCCGGCCATCGTGTGGAAGAAAAATTCAGTTGGAAGT 5672 Query 378318 AAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGC 378356 || ||| | ||| || || ||| ||||||| |||| Sbjct 5673 AA-ACCAGAATAAAACGAGTTCGCAACAAATCCTTTTGC 5710 >seq51 Length=33875 Score = 86.0 bits (94), Expect = 2e-11 Identities = 197/290 (68%), Gaps = 10/290 (3%) Strand=Plus/Plus Query 67767 ATTTATTGATAAAGAATTTATCCATTTCTCAACATACGAT--AATGAACGTTCTATTCCA 67824 ||| || |||||||||| |||| |||||| ||| |||| ||||| |||||| Sbjct 6721 ATTCATCAATAAAGAATTGATCCTTTTCTCCTTGGCAGATTTAATG--CGTTCGATTCCA 6778 Query 67825 AATTTAATTGATGGTTTTAAAATTAGTTTAAGAAAAATTATCTATTCGGCATTTAAGA-A 67883 || ||||| || ||| | | ||||| |||| | |||| || |||| | Sbjct 6779 TCCGCCATCGATGGCTTCAAACCTTCGCAACGAAAAGTTATGTTTTCGTGCTTCAAGAGA 6838 Query 67884 ACGTCTAACTAGT--GAAATTAAAGTTGCACAATTTAGTGGTTATGTTTCAGAACATTCA 67941 | || ||| ||| || || |||||||| ||||| || ||||| || || ||||||||| Sbjct 6839 AAGT-TAA--AGTCAGACATCAAAGTTGCGCAATTGAGCGGTTACGTCTCGGAACATTCA 6895 Query 67942 GGCTATCATCACGGTGAAGCTAGTTTAAATTCATCAATTGTAGGTTTAGCTCAGAATTTT 68001 | |||||| ||||||||||| | | || ||||||| | | || || | || Sbjct 6896 GCCTATCACCACGGTGAAGCGTCTCTCGCGTCCACAATTGTCAATCTCGCGCAAGACTTC 6955 Query 68002 GTTGGATCAAATAATATTAATTTACTAGAACCAAAAGGTCAATTTGGAAC 68051 ||||| | || || || || || ||| || | ||||||||||| || Sbjct 6956 GTTGGGACGAACAACATAAACTTGTTAGTCCCGAGCGGTCAATTTGGTAC 7005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515213280730754