Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq11 174 2e-38 >seq11 Length=57886 Score = 174 bits (192), Expect = 2e-38 Identities = 503/759 (66%), Gaps = 20/759 (3%) Strand=Plus/Plus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 ||||||| |||||| ||||| || || || || || |||| ||| ||||| ||| Sbjct 11691 GATGCCAAGTTGCAAACGGCGGTTTCTTCTGGTGAAGTGTATTCGACGATCTCTGTACAC 11750 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 || || ||||| ||||| ||||| | || | ||||| ||| ||| || || ||| Sbjct 11751 AAGTTGGACGATTTGATCGTGCCTAAATTTTGTTGGTTTGACTTGCGGTTGCACGCATCC 11810 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTT-GAGAACGCCGTCCCAGAT 79235 || | ||||||| || | || || || || || | ||| ||||| | ||| | Sbjct 11811 TTAAACAACATGTATGGGTTGCCAGTTTCCACTTG-CGCTTCGAGAATAGCAAACCAAAG 11869 Query 79236 GTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGTACAACTC 79295 | | |||| | ||||||| | | | ||||| | ||||| | Sbjct 11870 CTGCTGGGCATTAATTGTCTTCTTGCCCTTGTTTTCTCTTTCGTACTTGGTGTACAGAGC 11929 Query 79296 GTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTG 79355 | ||| | || || || |||| || ||||||||||||| |||||||||||| Sbjct 11930 TTCGAATTCTTCACCCCAGCATTCGGACAAACCCGGGCACTCGTTCGGGCACATCAGTGT 11989 Query 79356 CCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAA 79415 ||| | ||| | || || | | |||||| | || |||||| | |||| || Sbjct 11990 CCACTTGCCGTTTTCTTCGACTCTTTTCATGAACAAATCGTTCGTCCACAAG-CCGTAAA 12048 Query 79416 G-AGGTCGCGGCAAC--GCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTC 79472 | ||| || | || ||| || | ||| |||||| | || ||||| |||| Sbjct 12049 ACAAGTCACGAGCTCTAGCTTCT--TCCTTGCCGTGGTTCTTTCTCAAATCGAGCCAGTC 12106 Query 79473 CATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCC 79532 | |||||| | |||||| || || ||||||||||| || | ||||||||||| ||||| Sbjct 12107 GAAGATGTCCGAGTGCCATGGTTCGAGATAGATGGCAAAAGCGCCCTTGCGCTTACCGCC 12166 Query 79533 GCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTC 79592 ||| |||| || |||| || |||| |||||| || || ||||| || | || |||| Sbjct 12167 GCCTTGGTCCACATACCTCGCTGTGTCGTTGAACACCCGAAGCATCGGAATAATACCGT- 12225 Query 79593 GGCGACG--CCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGG 79650 ||| | ||||| || || |||| | | | || || ||| ||| | | ||| Sbjct 12226 -TCGAAGTACCGTTTGTGCCTCTGATATACGAAGACGTGGCACGGATG-TCGTG-AATGG 12282 Query 79651 --ATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGA 79708 | ||||| || |||| ||||||| ||| |||||||||||| | ||| ||||||| Sbjct 12283 ACAAACCGATACCACCGGCGGACTTGGAAATGCACGCGCACTCCTTCAACGTGTCGTAGA 12342 Query 79709 TGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGG--GTT 79766 | || || || ||||| |||||||| | || ||||| || | ||| || | Sbjct 12343 TACCTTCAATGGAGTCTTCCTTCATGCAAATCAAAAAGCACGAGGAGAGCTGCGGTCGAG 12402 Query 79767 GTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGT 79805 || ||||| |||||||| | ||| |||| ||| ||||| Sbjct 12403 GT--GTACCAGCGTTGAACAAGGTTGGCGACGCATGCGT 12439 Score = 161 bits (178), Expect = 1e-34 Identities = 338/489 (69%), Gaps = 20/489 (4%) Strand=Plus/Minus Query 19199 ACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAACAAC--CCGCAGATGTC---GA 19253 ||||| ||| |||| ||| | |||||||| ||||| || | |||||| | || | Sbjct 12439 ACGCATGCGTCGCCAACCTTGTTCAACGCTGGTAC--ACCTCGACCGCAGCTCTCCTCGT 12382 Query 19254 GCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGG 19313 ||| ||| | | || |||||||| ||| |||||| || |||||||| ||| | |||| Sbjct 12381 GCTTTTTGAT--TTGC-ATGAAGGAAGACTCCATTGAAGGTATCTACGACACGTTGAAGG 12325 Query 19314 AGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGAT--CCACTGCTCGAATATCCG 19371 |||||||| ||| ||||||| |||| |||||||| | ||| | | ||| ||||| Sbjct 12324 AGTGCGCGTGCATTTCCAAGTCCGCCGGTGGTATCGGTTTGTCCATT-CACGAC-ATCCG 12267 Query 19372 GTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCT 19431 | | | | |||| || || ||||| | ||||||| | || ||||| Sbjct 12266 TGCCACGTCTTCGTATATCAGAGGCACAAACGGTACTTCGAACGGTATTATTCCGATGCT 12207 Query 19432 CCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTC 19491 || || |||||| |||| || ||||| || |||| || ||||| || ||||||||| | Sbjct 12206 TCGGGTGTTCAACGACACAGCGAGGTATGTGGACCAAGGCGGCGGTAAGCGCAAGGGCGC 12147 Query 19492 GTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCT 19551 || |||||||| ||||| ||||||||| ||||| || | || | ||||| || | Sbjct 12146 TTTTGCCATCTATCTCGAACCATGGCACTCGGACATCTTCGACTGGCTCGATTTGAGAAA 12087 Query 19552 GAACCAGGGTGACGAGGA-GAT-GCGCTGTCGCGACCTCTTC-ACGGCCTTGTGGATTCC 19608 |||||| || | || || | | | ||| || ||| | || ||||| ||||||| Sbjct 12086 GAACCACGGCAAGGAAGAAGCTAGAGCT--CGTGACTTGTTTTACGGC-TTGTGGACGAA 12030 Query 19609 GGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGA 19668 || | |||||| | | || || | ||| | ||| |||||||||||| |||| Sbjct 12029 CGATTTGTTCATGAAAAGAGTCGAAGAAAACGGCAAGTGGACACTGATGTGCCCGAACGA 11970 Query 19669 ATGCCCTGG 19677 ||||| || Sbjct 11969 GTGCCCGGG 11961 Score = 93.3 bits (102), Expect = 5e-14 Identities = 304/468 (65%), Gaps = 17/468 (4%) Strand=Plus/Minus Query 20018 GTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCCGACCGAGGCGGCGCGC 20077 || || || || |||||||| | |||||| ||||| ||| ||| ||| | ||| Sbjct 11551 GTGACTCGCAACTTGAATCGCATTATCGATGTGAACTATTATCCGGTCGAAACTGCGAAG 11492 Query 20078 AAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTC 20137 | |||||| || ||| ||||||| | | || || || || | || ||||| ||| Sbjct 11491 AGATCGAATTTGAAGCACAGGCCGATTGGATTAGGTGTTCAAGGTTTAGCTGACGTCTTC 11432 Query 20138 ATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTC 20197 || |||||||| | | || ||| | | |||| | | | || | ||||| Sbjct 11431 ATCTTGCTCGGCTTACCGTTTGACTCTGCTGAGGCACAAAAATTGAATGCCGAAATCTTT 11372 Query 20198 GAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCG 20257 ||| | | ||| ||| || | | |||||| |||||| || ||||| || ||| || Sbjct 11371 GAGACGATTTACTTCGCAGCGTTGCAAGAATCGAACGAACTTGCGAAAGAAGAGGGCACG 11312 Query 20258 TACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGC 20317 ||||| | | | | || || || | ||| ||||| | | || ||||||||||||||| Sbjct 11311 TACGAATCCTACGAAGGTTCCCCAGTTTCCAAGGGTGTGTTGCAACCGGACATGTGGGGC 11252 Query 20318 GTCACTGAGAATGAGTTTTGG----AG-CGC-CCTCAAG---GTTGAG-------ATCAA 20361 |||| || |||| || || | | || || |||||| ||| Sbjct 11251 CTCACCGA-AATGCCGGGCGGCAAAAGACACGGCTGGAGTGAGTTGAGAGAATCCATCGC 11193 Query 20362 GACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCA 20421 | ||||| |||||||||| | | || || || ||||| ||||| || || | || Sbjct 11192 CAAACACGGCGTTCGCAACTCTCTCTTAGTTGCACCGATGCCAACCGCGTCAACGTCTCA 11133 Query 20422 GATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTA 20469 || |||| ||||||||| ||||| ||||| || | ||||| || Sbjct 11132 AATTTTGGGTAACAACGAGTGCTTCGAACCGTATACTTCGAACATTTA 11085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548510277805920