Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq11 125 8e-24 seq64 91.5 2e-13 >seq11 Length=57886 Score = 125 bits (138), Expect = 8e-24 Identities = 546/857 (64%), Gaps = 25/857 (3%) Strand=Plus/Plus Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCA 80966 ||| |||| ||||| ||||| ||||| | || | |||||||| || || || Sbjct 11690 GGATGCCAAGTTGCAAACGGCGGTTTCTTCTGGTGAAGTGTATTCGACGATCTCTGTACA 11749 Query 80967 CAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTC 81026 ||| || || || || || || || | |||| |||||||||||| |||||| || || Sbjct 11750 CAAGTTGGACGATTTGATCGTGCCTAAATTTTGTTGGTTTGACTTGCGGTTGCACGCATC 11809 Query 81027 CTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAAT 81086 ||| | ||||||| ||| | || || || || || | | ||| || || ||||| Sbjct 11810 CTTAAACAACATGTATGGGTTGCCAGTTTCCACTTGCGCTTCGAGAATAGCAAACCAAAG 11869 Query 81087 CTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA---AGC 81143 || | || || | ||| | ||| ||| | ||||||| ||| ||| Sbjct 11870 CTGCTGGGCATTAATTGTCTTCTTGCCCTTGTTTTCTCTTTCGTACTTGGTGTACAGAGC 11929 Query 81144 TTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAG 81203 |||| || | |||| ||| | | | ||||||||||| ||||||||||| Sbjct 11930 TTCG---AATTCTTCACCCCAGCATTCGGACAAACCCGGGCACTCGTTCGGGCACATCAG 11986 Query 81204 GTGCCAGTCGGTGTCGTTCTCT---ACAGCCTTCATG---AAAGCGTCAGGGATCCAGAG 81257 ||| | || |||| ||| || |||||| ||| ||| | |||| | Sbjct 11987 TGTCCACT---TGCCGTTTTCTTCGACTCTTTTCATGAACAAATCGTTCG---TCCACAA 12040 Query 81258 GGCGGTGAACAGGTCGCGGCAGCGC--GCCTCCTCATCACCCTGGTTGAGGCGCAACTCG 81315 | || |||| ||| || ||| | || || || | || ||||| | ||| ||| Sbjct 12041 GCCGTAAAACAAGTCACG--AGCTCTAGCTTCTTCCTTGCCGTGGTTCTTTCTCAAATCG 12098 Query 81316 AGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG- 81374 || |||| | |||||||| |||||||| || ||||| | ||| | | |||||||| Sbjct 12099 AGCCAGTCGAAGATGTCCGAGTGCCATGGTTCGAGATAGATGGCAAAAGCGCCCTTGCGC 12158 Query 81375 --ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATG 81432 || ||| || |||| || || | || || |||| || || || | ||| || || Sbjct 12159 TTACCGCCGCCTTGGTCCACATACCTCGCTGTGTCGTTGAACACCCGAAGCATCGGAATA 12218 Query 81433 ATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTG 81492 ||||| | || |||||| || || |||| ||| | |||| || | | | Sbjct 12219 ATACCGTTCGAAGTACCGTTTGTGCCTCTGATATACGAAGACGTGGCACGGATGTCGTGA 12278 Query 81493 ATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCA 81552 || || | |||||| ||||| | |||| ||||| || ||| |||| || || Sbjct 12279 ATGGACAAACCGATACCACCGGCGGACTTGGAAATGCACGCGCACTCCTTCAACGTGTCG 12338 Query 81553 TAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGG 81612 || || || || ||| |||| |||||| || ||| || || || | ||| || Sbjct 12339 TAGATACCTTCAATGGAGTCTTCCTTCATGCAAATCAAAAAGCACGAGGAGAGCTGCGGT 12398 Query 81613 CTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATC 81672 | || || || ||||||| ||||| | ||| || | | |||| | |||| | Sbjct 12399 CGAGGTGTACCAGCGTTGAACAAGGTTGGCGACGCATGCGTCATCCAACGCTCAGACAAC 12458 Query 81673 AGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGC 81732 | || |||||||| | | | ||||| | ||| |||||||| | ||| | | Sbjct 12459 ATGTGGTAGGTTTCAATAGCCTTTTCGATATCCTTCTTGTGGATACCGATGGATACTCTC 12518 Query 81733 ATAAACATGTACTGGGG 81749 || ||||||| ||| || Sbjct 12519 ATCAACATGTGCTGTGG 12535 >seq64 Length=29840 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || || || || ||||| || || ||||| || | || | || |||| || Sbjct 4870 ACGGGGAAAACCATCACTCTCGAAGTCGAGTCTTCGGACACGATCGACAACGTGAAAGCG 4811 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 |||||||| ||||||||||| || || || ||||||||||| | |||||||| ||||| Sbjct 4810 AAAATTCAAGACAAGGAGGGCATCCCGCCGGACCAGCAGCGATTGATTTTTGCCGGTAAA 4751 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCAC 27602 ||| | || || | | || || || || || || ||||||| || ||||| Sbjct 4750 CAATTAGAAGACGGGAGAACTCTCGCGGATTACAACATCCAAAAAGAGTCCAC 4698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570295301032160