Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq97 138 1e-27 seq277 132 4e-26 seq64 132 4e-26 >seq97 Length=23129 Score = 138 bits (152), Expect = 1e-27 Identities = 259/378 (69%), Gaps = 2/378 (1%) Strand=Plus/Plus Query 135380 TGGGCGCAACAAACTTTGCACGCTCACGCCTCTGATCGCAGAGACTTTTGTTACACGCGC 135439 ||||| || | ||||| | || ||||| ||| ||||| | | |||||| | Sbjct 21994 TGGGCAAAAGATACTTTACGAGCGCACGCGGGAGATAAAAGAGAATATACATACACGTAC 22053 Query 135440 GAGCAATGGGACCAAGCGTTGACGCATGACCCGTTGTGGAACGCGGCACAACGGCAGCTT 135499 || ||| || ||||| ||||| ||| || |||||||| || ||||| |||| Sbjct 22054 GAAGAATTTGAGCAAGCTCAAACGCACGACAATTTATGGAACGCTGCGCAACGCGAGCTC 22113 Query 135500 AAGCGAGAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAA 135559 | || |||||||||||||| |||||||||||||||||||| || || |||||| Sbjct 22114 GTTTACGGTGGTAAAATGCACGGATTCATGCGCATGTATTGGGCAAAGAAAATCTTGGAA 22173 Query 135560 TGGTCTGCATCGCCTGCAGAGGCGCTACAACACGCAATATTTTTTAATGATTACTACAGT 135619 ||||| | | || | | | || | || |||| || ||| || ||| || Sbjct 22174 TGGTCCGATACTCCCGAAAACGCTTTGAAATACGCCATCGCTTTGAACGATCGCTGGTCG 22233 Query 135620 TTAGATGGACGCGATTCAAATGGCTACGTAGGTTGTATGTGGTCTATTTGCGGTGTACAC 135679 | || ||| | ||| | | || ||||| || || |||||||| || ||| || ||| Sbjct 22234 CTCGACGGAAGAGATCCGAGCGGTTACGTTGGATGCATGTGGTCCATCGTCGGCGTGCAC 22293 Query 135680 GATCAAGGATGGAAGGAGCGCAAAGTGTTTGGCAAGATTCGCTATATGAACTATGACGGT 135739 || ||||| ||||| |||||| | ||||| || || ||||| || |||| || |||| Sbjct 22294 GACCAAGGGTGGAAAGAGCGCGACGTGTTCGGAAAAATTCGGTACATGACATACAGCGGT 22353 Query 135740 TG-TACAAGAAAATTTAA 135756 || | ||| |||||||| Sbjct 22354 TGCGAGAAG-AAATTTAA 22370 >seq277 Length=9178 Score = 132 bits (146), Expect = 4e-26 Identities = 155/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 |||| ||||| | || || | || ||||| | ||||| |||| || | ||||| Sbjct 8270 TGACTGGCAAAACGATAACGTTGGAGGTGGAGTCTTCCGATACGATCGATAACGTCAAGG 8211 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 || || |||||||||||||| || || || || |||||||| || |||| |||||| | Sbjct 8210 CGAAGATCCAAGACAAAGAAGGGATCCCCCCGGACCAACAGCGGTTGATATTCGCCGGGA 8151 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCG-ATTACAACATTCAAAAGGAGTCGACCTTA 27188 | |||||||||||| | ||| |||| || |||||||||| |||||||| ||||| | Sbjct 8150 AGCAATTGGAAGACGGG-CGAACGTTGGCGGATTACAACATCCAAAAGGAATCGACGCTG 8092 Query 27189 CATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || || |||||||||| || ||| Sbjct 8091 CACTTAGTGCTGCGTTTGCGAGGCGGC 8065 >seq64 Length=29840 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27003 AAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATG 27062 |||||| |||| || || | || ||||| ||||| || | || ||| |||| || | Sbjct 4879 AAAACTTTGACGGGGAAAACCATCACTCTCGAAGTCGAGTCTTCGGACACGATCGACAAC 4820 Query 27063 GTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATAC 27122 || ||| |||||||||||||| || ||||| || || || || ||||| || || | Sbjct 4819 GTGAAAGCGAAAATTCAAGACAAGGAGGGCATCCCGCCGGACCAGCAGCGATTGATTTTT 4760 Query 27123 GCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCG 27182 ||||| |||||||| |||||| | || | | ||||||||||| ||||| ||||| Sbjct 4759 GCCGGTAAACAATTAGAAGACGGGAGAACTCTCGCGGATTACAACATCCAAAAAGAGTCC 4700 Query 27183 ACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || || ||||||||| | ||| | |||||| Sbjct 4699 ACGTTGCACTTGGTTTTGAGATTGAGAGGTGGC 4667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434906885535360