Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq277 141 2e-28 seq64 132 1e-25 seq1221 127 5e-24 seq1220 127 5e-24 seq1271 111 4e-19 >seq277 Length=9178 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || | ||| || || ||||| ||||||| |||||||| ||||| |||| ||| || Sbjct 8080 CAGCACTAAGTGCAGCGTCGATTCCTTTTGGATGTTGTAATCCGCCAACGTTCGCCCGTC 8139 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| | |||||||| ||||| || | || |||||||| || || || ||||| ||||| Sbjct 8140 TTCCAATTGCTTCCCGGCGAATATCAACCGCTGTTGGTCCGGGGGGATCCCTTCTTTGTC 8199 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||| || ||||| || || || | ||||| || ||||| ||||| Sbjct 8200 TTGGATCTTCGCCTTGACGTTATCGATCGTATCGGAAGACTCCACCTCCAACGTTATCGT 8259 Query 225681 CTTGCCCGTCAAAGTTTTTATGA 225703 ||||| |||| | ||| |||| Sbjct 8260 TTTGCCAGTCACTGATTTGATGA 8282 >seq64 Length=29840 Score = 132 bits (146), Expect = 1e-25 Identities = 152/202 (75%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | ||| | ||||| |||||||||| |||||||| || | ||||||||| Sbjct 4679 TCTCAAAACCAAGTGCAACGTGGACTCTTTTTGGATGTTGTAATCCGCGAGAGTTCTCCC 4738 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||||| || || || || || || | ||| || ||||| ||||| || || ||||| Sbjct 4739 GTCTTCTAATTGTTTACCGGCAAAAATCAATCGCTGCTGGTCCGGCGGGATGCCCTCCTT 4798 Query 225618 GTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGA 225676 |||||| || ||| || ||||| ||||| ||||| || | || || || | |||| Sbjct 4799 GTCTTGAAT-TTTCGCTTTCACGTTGTCGATCGTGTCCGAAGACTCGACTTCGAGAGTGA 4857 Query 225677 TCGTCTTGCCCGTCAAAGTTTT 225698 | || || |||||||||||||| Sbjct 4858 TGGTTTTCCCCGTCAAAGTTTT 4879 >seq1221 Length=956 Score = 127 bits (140), Expect = 5e-24 Identities = 130/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 |||||||||||||||||| | || || ||||| || ||||||| || || | |||||| Sbjct 661 CAACTTTACAACGTTATTGTAACCGCTCATGCATTCCTTATGATCTTTTTCATGGTTATG 720 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || | | || || ||||| || || || ||||| || | |||||||||||||| ||| Sbjct 721 CCAGCCTTAATTGGTGGTTTTGGGAACTGGTTCGTGCCAATTATGATTGGTGCTCCAGAT 780 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTC 7721 ||||| |||||| | | || ||||| ||||| || ||| |||| || || Sbjct 781 ATGGCATTTCCACGCTTGAATAATATTAGTTTCTGGTTATTACCTCCATC 830 >seq1220 Length=957 Score = 127 bits (140), Expect = 5e-24 Identities = 130/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 |||||||||||||||||| | || || ||||| || ||||||| || || | |||||| Sbjct 661 CAACTTTACAACGTTATTGTAACCGCTCATGCATTCCTTATGATCTTTTTCATGGTTATG 720 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || | | || || ||||| || || || ||||| || | |||||||||||||| ||| Sbjct 721 CCAGCCTTAATTGGTGGTTTTGGGAACTGGTTCGTGCCAATTATGATTGGTGCTCCAGAT 780 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTC 7721 ||||| |||||| | | || ||||| ||||| || ||| |||| || || Sbjct 781 ATGGCATTTCCACGCTTGAATAATATTAGTTTCTGGTTATTACCTCCATC 830 >seq1271 Length=896 Score = 111 bits (122), Expect = 4e-19 Identities = 108/138 (78%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 7724 TATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGC 7783 ||| || ||| |||||||| || | ||||| | || ||||||||||||| ||||||||| Sbjct 502 TATGTCAAGGATTGGTAAGGTTTTGCGCGTTGTTTCGAATTAAACCACATGCTCCACCGC 443 Query 7784 TTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843 || | || | |||||| || ||||| |||||| |||||||| |||||| | |||| || Sbjct 442 TTGTGTAAGCCCCCGTCAATTCCTTTGGGTTTTAGCCTTGCGGCCGTAGTCCCCAGGCGG 383 Query 7844 AATATTT-ACGCGTTAGC 7860 |||| | |||||||| Sbjct 382 CTGATTTCATGCGTTAGC 365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192498838429892