Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq70 131 1e-25 seq330 87.8 2e-12 seq329 87.8 2e-12 seq327 87.8 2e-12 seq114 87.8 2e-12 >seq70 Length=28206 Score = 131 bits (144), Expect = 1e-25 Identities = 359/547 (66%), Gaps = 10/547 (2%) Strand=Plus/Plus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 ||||| ||||| ||||| || |||||||| | || |||| ||||||||||| || || Sbjct 6616 CACGCGAAATCGCAATGTAACCCTTCGTCGCGACTGATCAACTCGTTAGAAAATGTCAAG 6675 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCG--GCAAATGACCCAGAAAAGA 4665 || ||| || |||||||| || | |||||| || ||| | || || | | |||| | Sbjct 6676 CCTTTCATCAACCCTCTCTTCTTTAACCAAAAGATGGCGCAGAAACTGCCGCTGAAA--A 6733 Query 4666 ATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGC---TTTGT 4722 | || ||||| ||| || ||| | ||||| || ||||| || || | Sbjct 6734 AAATCCCTTCCACGCACGCGAACCCGACTAAACGTTCGGCGAAC---CTCGCCGAGGGGG 6790 Query 4723 CTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAG 4782 || ||||||||| | ||||| | ||||| || || ||| ||||| || | || | Sbjct 6791 ATTCAATCCATTTCATCGCCCAATCCGCTTTCTTTTTCACGGTTGGAATCGTATGAATCG 6850 Query 4783 CGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTAT 4842 | ||| || || || || | || ||||||| | || || |||| | | || Sbjct 6851 CTCCAAACAAATTTCTCTTCTGAATCGGGTCTTTCACGTACGTCTCTAACAACAAAGCAT 6910 Query 4843 ACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTG 4902 || |||| || |||||||| || || |||||| ||||||| || || || | Sbjct 6911 ACGTTTCGCTGTGAATATTTTCAATCGCTTGCTGAAACGCGTAAAACGCTCGTGCCTCGG 6970 Query 4903 TTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGG 4962 ||||||| || || || || | || || || || || ||||| || Sbjct 6971 GAACTTGAATCTCTTTCATGAACCTCACGCACAAATTCTCCAAGACAATGCCGTCCGAGG 7030 Query 4963 CTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCC 5022 |||| ||||||||||||||||| | ||||||| || |||| || || | ||| Sbjct 7031 CTGCGAAAAACGCCAAAACATGCGTGATAAAGTGTTGCTCGTTCTCATTCAGCGTGATCC 7090 Query 5023 AGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTT 5082 | | |||| | || ||||||| || || | |||||||| ||| ||||||| Sbjct 7091 AATCTCTGTAATCGTACGTCAAATCAATCTCCTCCGCCGTCCAAAAGCTCGCCTCCGCTT 7150 Query 5083 TTTTGTA 5089 | ||||| Sbjct 7151 TCTTGTA 7157 >seq330 Length=7938 Score = 87.8 bits (96), Expect = 2e-12 Identities = 301/460 (65%), Gaps = 16/460 (3%) Strand=Plus/Minus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 || ||| | ||||| ||||| || ||||| || ||||| || || ||||||| || Sbjct 4337 ACGCCAGACTTTTGATATTCACCGACACGCTTCTCAAAGAAGTTCGTCTTGCCTTGCAAG 4278 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTT-TTCACACTTTAG 4366 || || |||||| | |||||||| || | || ||| || || ||| | | Sbjct 4277 GAGATCAATTCCATCCAGTCAAACGGGTTCG---CGGTGTTATATTCCTTCGCGAAGCCG 4221 Query 4367 AGCTACAAG--CAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTA 4424 |||| | || ||| | || || ||| | || || || | ||||| | ||| ||| Sbjct 4220 AGCTGCGAGAGCAAGTGATCGGCAACATACTCGATGTAATCTCTCATCATGTCGGCGTTC 4161 Query 4425 ATTCCAATTAATCTCACA-GGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGC 4483 || || | || | |||| || | ||| | || |||||| | || || || || Sbjct 4160 ATACCGAC-AAGCGCACATGGCAACGCATCGCACACAAACTCCTTCTCAATCTCAACCGC 4102 Query 4484 TTCTGTGATTATATCTTTTATTTTATCTTTAGATGGT---TTATTTACTA-AGTATCCAA 4539 ||| || | || | | | | ||| |||| | || || |||| | ||| | || Sbjct 4101 TTCGGTAACAATCTTTCTCAATTTTTCTTCACCCGGCGTGTTGTTTAACATAGTGTA-AA 4043 Query 4540 ACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAA 4599 ||| ||||| ||||| | ||||||||||| |||||| |||| || || || | Sbjct 4042 GCAAG---CACGCGAAATCTCTGTGCAAACCTTCATCTCTGGAGATCAACTCATTGGAGA 3986 Query 4600 ACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAG 4659 | || | || ||||| | |||||||| || ||||| | || | | || || || | Sbjct 3985 AGGTAAGCCCCGGCATCATGCCTCTCTTCTTGAGCCAGTAGATGGAGCAGAAAGAGCCGG 3926 Query 4660 AAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCG 4699 ||||||| |||||||| ||| ||| ||||| || || || Sbjct 3925 AAAAGAAGATGCCTTCGACGCAGGCGAACGCGACCAAACG 3886 >seq329 Length=7938 Score = 87.8 bits (96), Expect = 2e-12 Identities = 301/460 (65%), Gaps = 16/460 (3%) Strand=Plus/Minus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 || ||| | ||||| ||||| || ||||| || ||||| || || ||||||| || Sbjct 4337 ACGCCAGACTTTTGATATTCACCGACACGCTTCTCAAAGAAGTTCGTCTTGCCTTGCAAG 4278 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTT-TTCACACTTTAG 4366 || || |||||| | |||||||| || | || ||| || || ||| | | Sbjct 4277 GAGATCAATTCCATCCAGTCAAACGGGTTCG---CGGTGTTATATTCCTTCGCGAAGCCG 4221 Query 4367 AGCTACAAG--CAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTA 4424 |||| | || ||| | || || ||| | || || || | ||||| | ||| ||| Sbjct 4220 AGCTGCGAGAGCAAGTGATCGGCAACATACTCGATGTAATCTCTCATCATGTCGGCGTTC 4161 Query 4425 ATTCCAATTAATCTCACA-GGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGC 4483 || || | || | |||| || | ||| | || |||||| | || || || || Sbjct 4160 ATACCGAC-AAGCGCACATGGCAACGCATCGCACACAAACTCCTTCTCAATCTCAACCGC 4102 Query 4484 TTCTGTGATTATATCTTTTATTTTATCTTTAGATGGT---TTATTTACTA-AGTATCCAA 4539 ||| || | || | | | | ||| |||| | || || |||| | ||| | || Sbjct 4101 TTCGGTAACAATCTTTCTCAATTTTTCTTCACCCGGCGTGTTGTTTAACATAGTGTA-AA 4043 Query 4540 ACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAA 4599 ||| ||||| ||||| | ||||||||||| |||||| |||| || || || | Sbjct 4042 GCAAG---CACGCGAAATCTCTGTGCAAACCTTCATCTCTGGAGATCAACTCATTGGAGA 3986 Query 4600 ACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAG 4659 | || | || ||||| | |||||||| || ||||| | || | | || || || | Sbjct 3985 AGGTAAGCCCCGGCATCATGCCTCTCTTCTTGAGCCAGTAGATGGAGCAGAAAGAGCCGG 3926 Query 4660 AAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCG 4699 ||||||| |||||||| ||| ||| ||||| || || || Sbjct 3925 AAAAGAAGATGCCTTCGACGCAGGCGAACGCGACCAAACG 3886 >seq327 Length=7986 Score = 87.8 bits (96), Expect = 2e-12 Identities = 301/460 (65%), Gaps = 16/460 (3%) Strand=Plus/Plus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 || ||| | ||||| ||||| || ||||| || ||||| || || ||||||| || Sbjct 3650 ACGCCAGACTTTTGATATTCACCGACACGCTTCTCAAAGAAGTTCGTCTTGCCTTGCAAG 3709 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTT-TTCACACTTTAG 4366 || || |||||| | |||||||| || | || ||| || || ||| | | Sbjct 3710 GAGATCAATTCCATCCAGTCAAACGGGTTCG---CGGTGTTATATTCCTTCGCGAAGCCG 3766 Query 4367 AGCTACAAG--CAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTA 4424 |||| | || ||| | || || ||| | || || || | ||||| | ||| ||| Sbjct 3767 AGCTGCGAGAGCAAGTGATCGGCAACATACTCGATGTAATCTCTCATCATGTCGGCGTTC 3826 Query 4425 ATTCCAATTAATCTCACA-GGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGC 4483 || || | || | |||| || | ||| | || |||||| | || || || || Sbjct 3827 ATACCGAC-AAGCGCACATGGCAACGCATCGCACACAAACTCCTTCTCAATCTCAACCGC 3885 Query 4484 TTCTGTGATTATATCTTTTATTTTATCTTTAGATGGT---TTATTTACTA-AGTATCCAA 4539 ||| || | || | | | | ||| |||| | || || |||| | ||| | || Sbjct 3886 TTCGGTAACAATCTTTCTCAATTTTTCTTCACCCGGCGTGTTGTTTAACATAGTGTA-AA 3944 Query 4540 ACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAA 4599 ||| ||||| ||||| | ||||||||||| |||||| |||| || || || | Sbjct 3945 GCAAG---CACGCGAAATCTCTGTGCAAACCTTCATCTCTGGAGATCAACTCATTGGAGA 4001 Query 4600 ACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAG 4659 | || | || ||||| | |||||||| || ||||| | || | | || || || | Sbjct 4002 AGGTAAGCCCCGGCATCATGCCTCTCTTCTTGAGCCAGTAGATGGAGCAGAAAGAGCCGG 4061 Query 4660 AAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCG 4699 ||||||| |||||||| ||| ||| ||||| || || || Sbjct 4062 AAAAGAAGATGCCTTCGACGCAGGCGAACGCGACCAAACG 4101 >seq114 Length=19556 Score = 87.8 bits (96), Expect = 2e-12 Identities = 301/460 (65%), Gaps = 16/460 (3%) Strand=Plus/Minus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 || ||| | ||||| ||||| || ||||| || ||||| || || ||||||| || Sbjct 4337 ACGCCAGACTTTTGATATTCACCGACACGCTTCTCAAAGAAGTTCGTCTTGCCTTGCAAG 4278 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTT-TTCACACTTTAG 4366 || || |||||| | |||||||| || | || ||| || || ||| | | Sbjct 4277 GAGATCAATTCCATCCAGTCAAACGGGTTCG---CGGTGTTATATTCCTTCGCGAAGCCG 4221 Query 4367 AGCTACAAG--CAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTA 4424 |||| | || ||| | || || ||| | || || || | ||||| | ||| ||| Sbjct 4220 AGCTGCGAGAGCAAGTGATCGGCAACATACTCGATGTAATCTCTCATCATGTCGGCGTTC 4161 Query 4425 ATTCCAATTAATCTCACA-GGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGC 4483 || || | || | |||| || | ||| | || |||||| | || || || || Sbjct 4160 ATACCGAC-AAGCGCACATGGCAACGCATCGCACACAAACTCCTTCTCAATCTCAACCGC 4102 Query 4484 TTCTGTGATTATATCTTTTATTTTATCTTTAGATGGT---TTATTTACTA-AGTATCCAA 4539 ||| || | || | | | | ||| |||| | || || |||| | ||| | || Sbjct 4101 TTCGGTAACAATCTTTCTCAATTTTTCTTCACCCGGCGTGTTGTTTAACATAGTGTA-AA 4043 Query 4540 ACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAA 4599 ||| ||||| ||||| | ||||||||||| |||||| |||| || || || | Sbjct 4042 GCAAG---CACGCGAAATCTCTGTGCAAACCTTCATCTCTGGAGATCAACTCATTGGAGA 3986 Query 4600 ACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAG 4659 | || | || ||||| | |||||||| || ||||| | || | | || || || | Sbjct 3985 AGGTAAGCCCCGGCATCATGCCTCTCTTCTTGAGCCAGTAGATGGAGCAGAAAGAGCCGG 3926 Query 4660 AAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCG 4699 ||||||| |||||||| ||| ||| ||||| || || || Sbjct 3925 AAAAGAAGATGCCTTCGACGCAGGCGAACGCGACCAAACG 3886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427038576515294