Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq277 98.7 7e-16 seq64 95.1 9e-15 >seq277 Length=9178 Score = 98.7 bits (108), Expect = 7e-16 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || |||| || | || ||| | ||| ||||| |||||||||||||||||||| || Sbjct 8066 CCGCCTCGCAAACGCAGCACTAAGTGCAGCGTCGATTCCTTTTGGATGTTGTAATCCGCC 8125 Query 44171 A--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 | ||| ||| |||| |||| ||||||||||| || ||||| ||||| || || | | Sbjct 8126 AACGTT--CGCCCGTCTTCCAATTGCTTCCCGGCGAATATCAACCGCTGTTGGTCCGGGG 8183 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | | ||||| || || |||||| ||| | | | || || |||| || |||| Sbjct 8184 GGATCCCTTCTTTGTCTTGGATCTTCGCCTTGACGTTATCGATCGTATCGGAAGACTCCA 8243 Query 44289 CCTCCACCGTAATCGTCTTTCCCGT 44313 |||||| ||| ||||| || || || Sbjct 8244 CCTCCAACGTTATCGTTTTGCCAGT 8268 >seq64 Length=29840 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || ||||||| |||||| |||| ||| | |||| ||| ||||||||||||||||| ||| Sbjct 4668 CCACCTCTCAATCTCAAAACCAAGTGCAACGTGGACTCTTTTTGGATGTTGTAATCCGCG 4727 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || | | |||| || | || || |||||||| ||||| |||||||| || | || Sbjct 4728 AGAGTTCTCCCGTCTTCTAATTGTTTACCGGCAAAAATCAATCGCTGCTGGTCCGGCGGG 4787 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCAC 44289 | || ||||| || || ||| |||| | ||| | || ||||| | || || || Sbjct 4788 ATGCCCTCCTTGTCTTGAATTTTC-GCTTTCACGTTGTCGATCGTGTCCGAAGACTCGAC 4846 Query 44290 CTCCACCGTAATCGTCTTTCCCGT 44313 || | || || || || ||||| Sbjct 4847 TTCGAGAGTGATGGTTTTCCCCGT 4870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359981107522806