Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq213 107 4e-18 seq161 87.8 4e-12 >seq213 Length=298570 Score = 107 bits (118), Expect = 4e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 318987 GGTCTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTC 319046 || |||| ||||||| || | ||||| ||||| |||||||| || ||||| ||| |||| Sbjct 278922 GGCCTCTCTGTCTTCGCCAGTAGCATACCGCCACTGGATATATTGATTGGGAGTCTTGTC 278981 Query 319047 AAGATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGG 319106 || || || || ||||||||||| ||||| ||||| || || || | ||||| ||| || Sbjct 278982 TAGGTGCTCTTCAATGTGGTGGAACGCATGTTGTGCAACATATGCTACACGCACATTAGG 279041 Query 319107 ATGCTTCCAAACACTAC 319123 ||| | ||||| ||| Sbjct 279042 GTGCCTGAAAACAATAC 279058 >seq161 Length=363946 Score = 87.8 bits (96), Expect = 4e-12 Identities = 68/80 (85%), Gaps = 2/80 (3%) Strand=Plus/Minus Query 165696 GACTTAAAACGC--TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGT 165753 || || |||||| ||||||| |||||||||||||||||||| || || |||| || || Sbjct 298854 GAATTGAAACGCGTTTGCCCGGGTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGT 298795 Query 165754 GGTCGTGGGTTCGAGCCCCA 165773 |||| ||||||||||||||| Sbjct 298794 GGTCATGGGTTCGAGCCCCA 298775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057786714679130