Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq297 134 2e-26 >seq297 Length=204439 Score = 134 bits (148), Expect = 2e-26 Identities = 162/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 145875 GAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCA 145934 || |||||| | | |||||||||||| ||||||||| |||| ||| | |||||||| Sbjct 30299 GACCTGGCAAAACATGTGGCAGGGCGGAAGGGCCATGATAGGCAAGTCAGAGGGGTTCCA 30240 Query 145935 GGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCT 145994 ||| ||||||||| | | | | || || | | ||||||||| | ||| || | || Sbjct 30239 GGCCGTGAGGACGTGGCGGCGCCCTTCCGGATCCTTCTTGATCTGCTGTATGAGCTGCCG 30180 Query 145995 GAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCACGTACGCGGCCCCGA 146053 | ||| ||||| || ||||| | ||| || | | || | ||| |||| ||| |||| Sbjct 30179 CAACTGATCCACCCCTTGCCCACTGTAGTCGG-CGTGCATGTCGCTGTACTTGGCTCCGA 30121 Query 146054 AGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCC 146091 |||||| |||||| || ||||| ||||||||||||||| Sbjct 30120 AGTGCCGCCACTGAAAGCCGTACACGGGCCCCAGGTCC 30083 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 145777 GTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGC 145836 |||| ||||| || ||| |||||||||||||| ||||| |||| ||| | || ||| Sbjct 31988 GTCAACAGGGCATATGAGGCGATGTTGAAGGGCACACCCAGGCCCAGGTCACATGACCGC 31929 Query 145837 TGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTG 145880 ||||||| ||| ||| |||||||| ||||||| |||||||| Sbjct 31928 TGGTACATCTGACAGCTCAGCTCCCCCTCCGCCACATAGAACTG 31885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590056508734040