Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq41 152 5e-32 seq152 118 1e-21 seq554 84.2 2e-11 >seq41 Length=668564 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| || || || ||||||||| | || ||||| ||| | Sbjct 29798 ATGCAGATCTTTGTCAAGACGCTGACAGGGAAGACCATCACCCTGGAGGTCGAGTCCAGC 29857 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| ||| |||| ||||| || |||||||| | |||||| Sbjct 29858 GACACCATCGACAATGTCAAGGCAAAGATTCAGGACAAGGAAGGCATCCCGCCAGACCAG 29917 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || || || |||||||| || | |||||||| ||||| ||| Sbjct 29918 CAGCGCCTGATCTTTGCCGGGAAGCAGCTGGAGGATGGCCGCACCCTGGCTGACTATAAC 29977 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| | || || ||||| ||||||||| ||||||| || Sbjct 29978 ATCCAGAAGGAATCTACCCTTCATCTGGTGTTGCGCCTGAGGGGGGG 30024 Score = 143 bits (158), Expect = 3e-29 Identities = 163/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || || || ||||||||| | || || || ||| | Sbjct 27144 ATGCAAATCTTTGTCAAGACCCTGACAGGGAAGACCATCACCCTGGAAGTGGAGTCCAGC 27203 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| ||| || | ||||| ||||||||||| | ||||| Sbjct 27204 GACACCATCGACAACG-TCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCA 27262 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || || || |||||||| || | |||||||| ||||| || Sbjct 27263 GCAGCGCCTGATCTTTGCCGGGAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTATAA 27322 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| | ||||| ||||| ||| |||| Sbjct 27323 CATCCAGAAGGAGTCGACGCTTCATCTGGTGCTGCG 27358 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || ||||| ||| | || ||||| | | | Sbjct 28303 ATGCAGATCTTTGTCAAGACCCTGACAGGGAAGACCATTACCCTGGAGGTCGAGTCGAGC 28362 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| ||| || | ||||| ||||||||||| | ||||| Sbjct 28363 GACACCATCGACAACGTT-AAGGCAAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCA 28421 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||||| || |||||||| || | |||||||| ||||| || Sbjct 28422 GCAGCGCCTGATCTTTGCGGGGAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTATAA 28481 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| | || || ||||| ||| |||| Sbjct 28482 CATCCAGAAGGAGTCGACCCTTCATCTGGTGCTGCG 28517 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 |||||||| |||| ||||| || ||||| | || ||||| || ||||| || | ||| Sbjct 25858 GGCATCCCTCCGGATCAGCAGCGCCTCATTTTTGCAGGCAAGCAACTGGAGGATGGCCGC 25917 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||| | ||||||||||||||||||||| | || ||||| | |||||||| ||| | Sbjct 25918 ACCTTGGCAGACTACAACATCCAGAAGGAGTCGACCTTGCATTTGGTGTTGCGGTTGCGT 25977 Query 40912 GGCGGC 40917 || ||| Sbjct 25978 GGAGGC 25983 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 |||||||| || | |||| |||||||| |||||||| || | |||||||| ||| Sbjct 28189 GACCAGCAGCGGTTGATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCAGAC 28248 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||||| | || || ||||| ||| ||||| || | || || Sbjct 28249 TACAACATCCAGAAGGAGTCAACACTCCATCTGGTGCTGCGCCTGCGAGGTGG 28301 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 |||||||| | |||||||| || || |||| || || || |||||||| || | ||| Sbjct 29672 GGCATCCCGCCAGACCAGCAGCGCCTGATCTTTGCCGGGAAGCAGCTGGAGGATGGCCGC 29731 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| ||||| || |||||||||||| | ||||| ||||| ||| |||| Sbjct 29732 ACCCTGGCAGACTATAATATCCAGAAGGAGTCGACGCTTCATCTGGTGCTGCG 29784 >seq152 Length=376403 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| | || || || || || || | || || || ||| | Sbjct 331654 ATGCAAATTTTTGTCAAAACTTTGACCGGTAAGACTATTACGTTGGAAGTGGAGTCCAGC 331595 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || |||| ||||| ||||||||||| | ||||| Sbjct 331594 GACACCATCGATAACG-TGAAGGCCAAGATTCAAGACAAGGAGGGCATCCCTCCCGACCA 331536 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || || | || |||||||||||||| || | || || || || ||||| Sbjct 331535 ACAGCGTCTTATTTTTGCCGGCAAACAGCTGGAGGATGGCCGGACGCTGGCTGATTACAA 331476 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | || || ||||| || ||||| ||| | || ||| Sbjct 331475 CATCCAGAAGGAGTCGACTCTTCATCTGGTTTTGCGTTTGCGTGGTGGC 331427 >seq554 Length=71240 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 73587 CACGCCGTGCTGCTGGTCGGCTACGGCGTCGAGAACGGAGTGCCCTACTGGGTGTTCAAG 73646 ||||| ||| | || |||| ||||| ||| | ||| ||||| |||| || | ||| Sbjct 37702 CACGCGGTGACGGTGATCGGTTACGGGAAGGAGGATGGAAAGCCCTTCTGGCTGGTGAAG 37643 Query 73647 AACACGTGGGGCGACGACTGGGGCGAGAACGGCTATTTCCGCGTCC 73692 ||| ||||||||||| | |||||||||||||||| |||||| ||| Sbjct 37642 AACTCGTGGGGCGACAAGTGGGGCGAGAACGGCTTCTTCCGCATCC 37597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515201482899760