Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq152 132 7e-26 seq41 132 7e-26 >seq152 Length=376403 Score = 132 bits (146), Expect = 7e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| | ||||| ||||| || ||| | ||| |||| ||| | Sbjct 329587 ATGCAAATCTTTGTCAAGACTTTGACAGGGAAAACCATTACTCTTGAGGTTGAGTCAAGT 329528 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||| ||||||||||| || ||||| || ||||| || Sbjct 329527 GACACCATTGACAATGTCAAGGCGAAGATTCAAGATAAGGAGGGTATCCCTCCTGACCAG 329468 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||| ||||| ||||| || || |||||| | || || | | || ||||| Sbjct 329467 CAGCGTCTTATCTTTGCTGGAAAGCAGTTGGAGGATGGGCGGACCCTGGCTGACTATAAC 329408 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || ||||| || || || |||||||||| | || | ||||||||| Sbjct 329407 ATCCAAAAGGAGTCCACACTGCATTTGGTGCTCCGCCTTCGAGGTGGT 329360 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || |||||||| || || || || || || || ||||| | ||||||||||| || ||| Sbjct 331570 AAGATTCAAGACAAGGAGGGCATCCCTCCCGACCAACAGCGTCTTATTTTTGCCGGCAAA 331511 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | |||||| | || || | | ||||| || || || || || || ||| | ||| Sbjct 331510 CAGCTGGAGGATGGCCGGACGCTGGCTGATTACAACATCCAGAAGGAGTCGACTCTTCAT 331451 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||| ||||| || ||||| || Sbjct 331450 CTGGTTTTGCGTTTGCGTGGTGGCAT 331425 >seq41 Length=668564 Score = 132 bits (146), Expect = 7e-26 Identities = 174/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || ||||| || ||| | || ||||| || || || || || ||| | || |||| | Sbjct 25081 ACCATGCAGATCTTTGTGAAAACACTGACTGGGAAGACCATCACTTTGGAAGTTGAGTCT 25140 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 ||||||||| ||| | || || |||||||| || || ||||| || || || Sbjct 25141 TCAGATACAATTGACAATGTGAAGGCCAAGATTCAAGACAAGGAGGGTATTCCTCCAGAC 25200 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || ||| | || |||||||| ||||| ||| | |||||| | || ||| ||| ||||| Sbjct 25201 CAGCAACGCCTCATTTTTGCTGGAAAGCAACTTGAGGATGGACGCACACTAGCGGATTAC 25260 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAAT 124775 |||||||||||||| || ||| ||||||| || | ||||| ||||| || || ||| | Sbjct 25261 AATATTCAAAAAGAGTCGACTCTGCATTTAGTCCTTCGTTTGCGAGGAGGCATGCAAATT 25320 Query 124776 T 124776 | Sbjct 25321 T 25321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755430021756800