Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq152 127 2e-24 seq41 116 3e-21 >seq152 Length=376403 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || || || | ||| |||| || | || ||||| || || ||||||||||| | Sbjct 331428 CCACCACGCAAACGCAAAACCAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCC 331487 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || |||||| |||||||| || || | || |||||||| || |||||||| Sbjct 331488 AGCGTCCGGCCATCCTCCAGCTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCGGGAGGG 331547 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||||||||||||| ||| || || || | |||| |||||| || ||| || Sbjct 331548 ATGCCCTCCTTGTCTTGAATCTTGGCCTTCACGTTATCGATGGTGTCGCTGGACTCCACT 331607 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || | || | || || ||||||| |||||| |||||||| |||||| Sbjct 331608 TCCAACGTAATAGTCTTACCGGTCAAAGTTTTGACAAAAATTTGCATG 331655 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| || | ||| ||||| ||||| ||||| || || || || ||| |||||| Sbjct 329378 CACCAAATGCAGTGTGGACTCCTTTTGGATGTTATAGTCAGCCAGGGTCCGCCCATCCTC 329437 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| |||||||| |||| ||||||||||| || ||||| || |||||||| ||| Sbjct 329438 CAACTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGGATACCCTCCTTATCTTG 329497 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | || | |||||| | ||| ||||| | || | ||||| Sbjct 329498 AATCTTCGCCTTGACATTGTCAATGGTGTCACTTGACTCAACCTCAAGAGTAATGGTTTT 329557 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || |||| ||| || ||||| || |||||| Sbjct 329558 CCCTGTCAAAGTCTTGACAAAGATTTGCATG 329588 >seq41 Length=668564 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | || ||||| || | || ||||| || || ||||| || || | Sbjct 28529 CCTCCGCGCAGACGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCTGCC 28470 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| |||||| ||||| || || || |||| || |||||||| || || || Sbjct 28469 AGGGTGCGGCCATCCTCCAGCTGCTTCCCCGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 28410 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| || ||| ||||| | |||| |||||| | ||||||| Sbjct 28409 ATGCCCTCCTTGTCCTGGATCTTTGCCTTAACGTTGTCGATGGTGTCGCTCGACTCGACC 28350 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | || || || ||||| || || ||||| |||||||| Sbjct 28349 TCCAGGGTAATGGTCTTCCCTGTCAGGGTCTTGACAAAGATCTGCAT 28303 Score = 109 bits (120), Expect = 5e-19 Identities = 147/201 (73%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTC 118599 || |||||||||||||| |||||||| | | ||||| |||| |||||| || || |||| Sbjct 25280 GTCGACTCTTTTTGAATATTGTAATC-CGC-TAGTGTGCGTCCATCCTCAAGTTGCTTTC 25223 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 |||| | ||||| || ||||| || ||||| || |||||||||||| ||| || | Sbjct 25222 CAGCAAAAATGAGGCGTTGCTGGTCTGGAGGAATACCCTCCTTGTCTTGAATCTTGGCCT 25163 Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 | || | || | || || | ||| || || | || | || || || ||||| | Sbjct 25162 TCACATTGTCAATTGTATCTGAAGACTCAACTTCCAAAGTGATGGTCTTCCCAGTCAGTG 25103 Query 118720 TTTTTACAAAAATCTGCATGG 118740 |||| ||||| |||||||||| Sbjct 25102 TTTTCACAAAGATCTGCATGG 25082 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | || ||||| || | || ||||| || || ||||| || || | Sbjct 27370 CCTCCGCGCAGACGCAGCACCAGATGAAGCGTCGACTCCTTCTGGATGTTATAGTCTGCC 27311 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| |||||| ||||| || || || |||| || |||||||| || || || Sbjct 27310 AGGGTGCGGCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 27251 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| || ||| || || | |||| |||||| || ||| || Sbjct 27250 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCGCTGGACTCCACT 27191 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | || || || ||||| || || ||||| || ||||| Sbjct 27190 TCCAGGGTGATGGTCTTCCCTGTCAGGGTCTTGACAAAGATTTGCAT 27144 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || || | ||||||||| || | || ||||| || || |||||||| || | Sbjct 25982 CCTCCACGCAACCGCAACACCAAATGCAAGGTCGACTCCTTCTGGATGTTGTAGTCTGCC 25923 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| |||||| || || || || || | ||||| ||||||||||| ||||| Sbjct 25922 AAGGTGCGGCCATCCTCCAGTTGCTTGCCTGCAAAAATGAGGCGCTGCTGATCCGGAGGG 25863 Query 118632 ATGCC 118636 ||||| Sbjct 25862 ATGCC 25858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433815854615692