Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq41 120 2e-22 >seq41 Length=668564 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||||||||| || | || || ||||| ||||| ||||| | | Sbjct 28529 CCTCCGCGCAGACGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCTGCC 28470 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| | || |||| |||||| || || || || || ||||||||||| | |||| Sbjct 28469 AGGGTGCGGCCATCCTCCAGCTGCTTCCCCGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 28410 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| |||||| ||| | | | | || | ||| |||| ||||| Sbjct 28409 -ATGCCCTCCTTGTCCTGGATCTTTGCCTTAACGTTGTCGATGGTGTCGCTCGACTCGAC 28351 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || ||||| || || || || || || |||||||||||||| Sbjct 28350 CTCCAGGGTAATGGTCTTCCCTGTCAGGGTCTTGACAAAGATCTGCAT 28303 Score = 120 bits (132), Expect = 2e-22 Identities = 168/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | || |||||| || | ||| ||| ||||| ||||| ||||| | | Sbjct 30024 CCCCCCCTCAGGCGCAACACCAGATGAAGGGTAGATTCCTTCTGGATGTTATAGTCAGCC 29965 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| | || |||| |||||| || || || || || ||||||||||| | |||| Sbjct 29964 AGGGTGCGGCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 29905 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| |||||| ||| | || | | || | ||| | || ||||| Sbjct 29904 -ATGCCTTCCTTGTCCTGAATCTTTGCCTTGACATTGTCGATGGTGTCGCTGGACTCGAC 29846 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 |||| |||||||| || || || || || || ||||||||||||||| ||| Sbjct 29845 CTCCAGGGTGATGGTCTTCCCTGTCAGCGTCTTGACAAAGATCTGCATCCCTC 29793 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||||||||| || | || || ||||| ||||| ||||| | | Sbjct 27370 CCTCCGCGCAGACGCAGCACCAGATGAAGCGTCGACTCCTTCTGGATGTTATAGTCTGCC 27311 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| | || |||| |||||| || || || || || ||||||||||| | |||| Sbjct 27310 AGGGTGCGGCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 27251 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| |||||| ||| | | | | || | ||| | || || || Sbjct 27250 -ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCGCTGGACTCCAC 27192 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| |||||||| || || || || || || |||||||| |||||| Sbjct 27191 TTCCAGGGTGATGGTCTTCCCTGTCAGGGTCTTGACAAAGATTTGCATC 27143 Score = 84.2 bits (92), Expect = 1e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 34244 TGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATC 34303 ||||| || || |||||||| || |||||||| || | | ||||||||| ||| Sbjct 25229 TGCTTTCCAGCAAAAATGAGGCGTTGCTGGTCTGGAGGAATACCCTCCTTGTCTTGAATC 25170 Query 34304 TTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCG 34363 || ||| | || | | || | ||| | || || || |||| |||||||| || || Sbjct 25169 TTGGCCTTCACATTGTCAATTGTATCTGAAGACTCAACTTCCAAAGTGATGGTCTTCCCA 25110 Query 34364 GTGAGAGTTTTCACAAAGATCTGCAT 34389 || || |||||||||||||||||||| Sbjct 25109 GTCAGTGTTTTCACAAAGATCTGCAT 25084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323061168102560