Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq152 111 1e-19 seq41 111 1e-19 >seq152 Length=376403 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | ||| | || |||| || || || ||||||||| |||||||| || Sbjct 331427 GCCACCACGCAAACGCAAAACCAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGC 331486 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| || | || ||||| ||||| ||||| || || | ||||||||||||||||| Sbjct 331487 CAGCGTCCGGCCATCCTCCAGCTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCGGGAGG 331546 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||||||||| ||| || ||| || | | | |||| | |||||| Sbjct 331547 GATGCCCTCCTTGTCTTGAATCTTGGCCTTCACGTTATCGATGGTGTCGCTGGACTCCAC 331606 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| ||||| ||||| || |||| ||| || ||||| ||||||||| Sbjct 331607 TTCCAACGTAATAGTCTTACCGGTCAAAGTTTTGACAAAAATTTGCATG 331655 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| ||||| ||| |||||| || ||||| ||||| ||| || | || ||| Sbjct 329379 ACCAAATGCAGTGTGGACTCCTTTTGGATGTTATAGTCAGCCAGGGTCCGCCCATCCTCC 329438 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || ||||| || || || | ||||| ||||| ||||| | ||||||||| || | Sbjct 329439 AACTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGGATACCCTCCTTATCTTGA 329498 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| ||||| | ||||| || || Sbjct 329499 ATCTTCGCCTTGACATTGTCAATGGTGTCACTTGACTCAACCTCAAGAGTAATGGTTTTC 329558 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| |||||| ||||||||||||||| Sbjct 329559 CCTGTCAAAGTCTTGACAAAGATTTGCATG 329588 >seq41 Length=668564 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || ||||| ||||||||| ||||| ||||| ||| ||| | || ||| Sbjct 27352 ACCAGATGAAGCGTCGACTCCTTCTGGATGTTATAGTCTGCCAGGGTGCGGCCATCCTCC 27293 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || |||| ||||| ||||| || || | |||||||||||| Sbjct 27292 AGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGG 27233 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | |||| | |||||| |||| ||| || ||||| Sbjct 27232 ATCTTTGCCTTGACGTTGTCGATGGTGTCGCTGGACTCCACTTCCAGGGTGATGGTCTTC 27173 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| ||||| |||||||||||||| Sbjct 27172 CCTGTCAGGGTCTTGACAAAGATTTGCAT 27144 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||| ||||| ||| ||| | || ||||| || || || || || Sbjct 28494 CTCCTTCTGGATGTTATAGTCTGCCAGGGTGCGGCCATCCTCCAGCTGCTTCCCCGCAAA 28435 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| ||||| ||||| || || | |||||||||||| || ||| |||||| Sbjct 28434 GATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTAACGTT 28375 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| | ||| ||||||| |||||| ||||| || ||||| ||||| || Sbjct 28374 GTCGATGGTGTCGCTCGACTCGACCTCCAGGGTAATGGTCTTCCCTGTCAGGGTCTTGAC 28315 Query 45325 AAAGATTTGCAT 45336 |||||| ||||| Sbjct 28314 AAAGATCTGCAT 28303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395061953992771