Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq41 109 5e-19 seq152 95.1 1e-14 seq126 87.8 2e-12 seq61 84.2 2e-11 >seq41 Length=668564 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| |||||||| || || |||||| | || || || | | Sbjct 29798 ATGCAGATCTTTGTCAAGACGCTGACAGGGAAGACCATCACCCTGGAGGTCGAGTCCAGC 29857 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | ||||||||||||| | ||||| ||||| Sbjct 29858 GACACCATCGACAATGTCAAGGCAAAGATTCA-GGACAAGGAAGGCATCCCGCCAGACCA 29916 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || || || || ||| |||| || || || || ||||| Sbjct 29917 GCAGCGCCTGATCTTTGCCGGGAAGCAGCTGGAGGATGGCCGCACCCTGGCTGACTATAA 29976 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||| || || ||||| || ||||||||||| | | |||||||| ||| Sbjct 29977 CATCCAGAAGGAATCTACCCTTCATCTGGTGTTGCGCCTGAGGGGGGGT 30025 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| |||||||| || || |||||| | || || || | | Sbjct 27144 ATGCAAATCTTTGTCAAGACCCTGACAGGGAAGACCATCACCCTGGAAGTGGAGTCCAGC 27203 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | ||||||||| ||| | ||||| ||||| Sbjct 27204 GACACCATCGACAACGTCAAGGCAAAGA-TCCAGGACAAGGAGGGCATCCCGCCAGACCA 27262 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || || || || ||| |||| || || || || ||||| Sbjct 27263 GCAGCGCCTGATCTTTGCCGGGAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTATAA 27322 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || ||||| ||||||||||| || Sbjct 27323 CATCCAGAAGGAGTCGACGCTTCATCTGGTGCT 27355 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| |||||||| || || || ||| | || || || || | Sbjct 28303 ATGCAGATCTTTGTCAAGACCCTGACAGGGAAGACCATTACCCTGGAGGTCGAGTCGAGC 28362 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| |||| | | || ||| | ||||||||| ||| | ||||| ||||| Sbjct 28363 GACACCATCGACAACGTTAAGGCAAAGA-TCCAGGACAAGGAGGGCATCCCGCCAGACCA 28421 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || || || || ||| |||| || || || || ||||| Sbjct 28422 GCAGCGCCTGATCTTTGCGGGGAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTATAA 28481 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || ||||| ||||||||||| || Sbjct 28482 CATCCAGAAGGAGTCGACCCTTCATCTGGTGCT 28514 >seq152 Length=376403 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||||||||| || || ||| |||| || || || || || | || || || | Sbjct 331655 CATGCAAATTTTTGTCAAAACTTTGACCGGTAAGACTATTACGTTGGAAGTGGAGTCCAG 331596 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | || || | || |||||||| ||| | || |||||||| Sbjct 331595 CGACACCATCGATAACGTGAAGGCCAAGATTCAAGACAAGGAGGGCATCCCTCCCGACCA 331536 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||||| || || || ||||||||| |||| || ||| || ||||| || Sbjct 331535 ACAGCGTCTTATTTTTGCCGGCAAACAGCTGGAGGATGGCCGGACGCTGGCTGATTACAA 331476 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||| || || || ||||||||||||||||| Sbjct 331475 CATCCAGAAGGAGTCGACTCTTCATCTGGT 331446 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || |||||| ||||||| ||||| || || | || ||||| | Sbjct 329588 CATGCAAATCTTTGTCAAGACTTTGACAGGGAAAACCATTACTCTTGAGGTTGAGTCAAG 329529 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || || || ||||| || | || || ||||| Sbjct 329528 TGACACCATTGACAATGTCAAGGCGAAGATTCAAGATAAGGAGGGTATCCCTCCTGACCA 329469 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || ||||| || |||||||| || ||| || || ||||| Sbjct 329468 GCAGCGTCTTATCTTTGCTGGAAAGCAGTTGGAGGATGGGCGGACCCTGGCTGACTATAA 329409 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| ||||| || || || || ||| |||| || Sbjct 329408 CATCCAAAAGGAGTCCACACTGCATTTGGTGCT 329376 >seq126 Length=422855 Score = 87.8 bits (96), Expect = 2e-12 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 58015 GCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTT 58073 ||||||| ||| |||| |||||| ||||||| || || || |||| || || || || Sbjct 387360 GCAGCTTCTGCT-CAATTTTTTGGCTGAAGAAGCGTGGTCTCATGCATGGTCTCACCTTC 387418 Query 58074 AGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTAC 58133 |||||||||||||||||| |||||||| || || |||||||| || || ||||| Sbjct 387419 TCCAACGAGTTGATATCGCGGGACGAGGGCCTTCACTGCGATTTTGCATGTCTGCTGTAC 387478 Query 58134 TC 58135 || Sbjct 387479 TC 387480 >seq61 Length=579265 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 || || ||||| || ||||| || ||| ||| || ||||||||||| || ||||| Sbjct 235863 GCAATGGAGGCCAGGTTGCACACAGCCGTCTCCTCCGCAGACGTGTACTCCACTATTTCA 235804 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140 || || || ||| || || ||||||| || ||||||| || || ||||| Sbjct 235803 GTGCACAGGTTGGAGCAGCGGATGGTGCCCAGGTTCTGCTGGTTGGACTTGCGGTTGCAT 235744 Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGA 23184 | |||||||| ||||||||||| | || || || |||||||| Sbjct 235743 GTGTCCTTGTACAGCATGTACGGGTTTCCGGTTTCCACCTGCGA 235700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445751071207920