Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq152 109 5e-19 seq41 89.7 5e-13 >seq152 Length=376403 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || ||||||||||| | |||| || ||||| || || ||||| ||||| Sbjct 331427 GCCACCACGCAAACGCAAAACCAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGC 331486 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | || || |||||||| || ||| | || ||||| || || |||||||| Sbjct 331487 CAGCGTCCGGCCATCCTCCAGCTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCGGGAGG 331546 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 ||||| || ||||| ||| | || | || | | || | |||||| ||| ||||| Sbjct 331547 GATGCCCTCCTTGTC-TTGAATCTTGGCCTTCACGTTATCGATGGTGTCGCTGGACTCCA 331605 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || | || | ||||| |||||||| ||||| || || |||||||| Sbjct 331606 CTTCCAACGTAATAGTCTTACCGGTCAAAGTTTTGACAAAAATTTGCAT 331654 >seq41 Length=668564 Score = 89.7 bits (98), Expect = 5e-13 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAAT-CGC 139595 ||| ||||| ||||| | ||||| || | || |||||||||||||| || |||| ||| Sbjct 25311 GCCTCCTCGCAAACGAAGGACTAAATGCAGAGTCGACTCTTTTTGAATATTGTAATCCGC 25252 Query 139596 TCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | | ||||| || | || || || || || |||||| | || || |||||||| || ||| Sbjct 25251 T-AGTGTGCGTCCA-TCCTCAAGTTGCTTTCCAGCAAAAATGAGGCGTTGCTGGTCTGGA 25194 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || || || || ||||| ||| | || | || | | || | ||| || | | ||| Sbjct 25193 GGAATACCCTCCTTGTC-TTGAATCTTGGCCTTCACATTGTCAATTGTATCTGAAGACTC 25135 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | || | ||||| || |||| ||||| || || || ||||| Sbjct 25134 AACTTCCAAAGTGATGGTCTTCCCAGTCAGTGTTTTCACAAAGATCTGCAT 25084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496046941599200