Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq152 100 2e-16 >seq152 Length=376403 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||||| | || |||| ||| | ||| |||||| || | |||||||| | Sbjct 331427 GCCACCACGCAAACGCAAAACCAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGC 331486 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || || | || |||| ||||||||||||||||| | |||||||| |||| || Sbjct 331487 CAGCGTCCGGCCATCCTCCAGCTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCGGGAGG 331546 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || ||| | || || | | | ||||||| | ||| || Sbjct 331547 GATGCCCTCCTTGTCTTGAATCTTGGCCTTCACGTTATCGATGGTGTCGCTGGACTCCAC 331606 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||| ||||| || ||||| | |||||| |||||||||||||| Sbjct 331607 TTCCAACGTAATAGTCTTACCGGTCAAAGTTTTGACAAAAATTTGCAT 331654 Score = 82.4 bits (90), Expect = 6e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| |||||||| | || |||||||||| || |||||||| | |||||| || | Sbjct 329588 GCCACCACGCAGACGCAAAACCAAATGGAGCGTTGATTCCTTTTGGATATTGTAGTCAGC 329647 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || || | || |||||||| ||||| ||||||||||| ||||| || || | ||| Sbjct 329648 CAGAGTTCGGCCATCTTCCAATTGCTTGCCAGCAAAAATCAAGCGCTGCTGGTCCGGCGG 329707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381356813511558