Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq41 91.5 1e-13 >seq41 Length=668564 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||| ||| | | || ||||| || || ||||||||||||||| ||||| | Sbjct 25310 CCTCCTCGCAAACGAAGGACTAAATGCAGAGTCGACTCTTTTTGAATATTGTAATCCGCT 25251 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | || |||| || | ||| ||||| ||||| || | ||||||||||| |||| Sbjct 25250 AGTGTGCGTCCATCCTCAAGTTGCTTTCCAGCAAAAATGAGGCGTTGCTGGTCTGGAGGA 25191 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||| || || ||| ||| || || || | ||| ||||||| | ||| || Sbjct 25190 ATACCCTCCTTGTCTTGAATCTTGGCCTTCACATTGTCAATTGTATCTGAAGACTCAACT 25131 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || || || || || || | || |||||||| || |||||| Sbjct 25130 TCCAAAGTGATGGTCTTCCCAGTCAGTGTTTTCACAAAGATCTGCATG 25083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354765705083148