Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq41 140 7e-28 seq152 120 7e-22 >seq41 Length=668564 Score = 140 bits (154), Expect = 7e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 ||||| || || | | || ||||| | |||||||| ||||| || |||||||||| Sbjct 30024 CCCCCCCTCAGGCGCAACACCAGATGAAGGGTAGATTCCTTCTGGATGTTATAGTCAGCC 29965 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || || | || || || || || || || ||||| || || | ||| || || || || Sbjct 29964 AGGGTGCGGCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 29905 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || |||||||||||||| || ||||| || | ||| ||||| | || ||| Sbjct 29904 ATGCCTTCCTTGTCCTGAATCTTTGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACC 29845 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| || || || || || ||||| |||||||| Sbjct 29844 TCCAGGGTGATGGTCTTCCCTGTCAGCGTCTTGACAAAGATCTGCAT 29798 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| |||| ||| | || || ||||| |||||||| || || | ||| || | || || Sbjct 25296 AAGGACTAAATGCAGAGTCGACTCTTTTTGAATATTGTAATCCGCTAGTGTGCGTCCATC 25237 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || ||||| |||||||||||||| || | || || || ||||| || || || || || Sbjct 25236 CTCAAGTTGCTTTCCAGCAAAAATGAGGCGTTGCTGGTCTGGAGGAATACCCTCCTTGTC 25177 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||| || || ||||| || | ||||| || || || || | || || || Sbjct 25176 TTGAATCTTGGCCTTCACATTGTCAATTGTATCTGAAGACTCAACTTCCAAAGTGATGGT 25117 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| |||||||| ||||| |||||||| Sbjct 25116 CTTCCCAGTCAGTGTTTTCACAAAGATCTGCAT 25084 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| || ||||||||||||||||| ||||| || | || ||||| | || ||||| Sbjct 26087 CCTTCCTTGTCCTGAATCTTTGCTTTCACATTGTCAATCGTGTCGCTCGACTCAACCTCC 26028 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | |||||||| || |||||||| ||||| ||||| |||||||| Sbjct 26027 AAAGTAATAGTTTTTCCAGTAAGAGTTTTGACAAAAATCTGCAT 25984 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| |||||||| ||||||||||| ||||| || | || || || | ||||| || Sbjct 25415 CCTTCCTTATCCTGGATCTTTGCTTTCACATTATCAATCGTGTCACTGGACTCTACTTCA 25356 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| ||||| |||||||| || || || || || ||||| Sbjct 25355 AGGGTAATTGTCTTCCCAGTAAGAGTCTTCACGAAAATTTGCAT 25312 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| ||||||||||||||||| || || || || | ||| ||||| | || ||||| Sbjct 27475 CCTTCCTTATCCTGAATCTTTGCCTTGACGTTGTCAATGGTGTCGCTGGACTCCACCTCC 27416 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | ||| || ||||| || || || || || ||||| |||||||| Sbjct 27415 AATGTGATGGTCTTCCCTGTCAGGGTCTTGACAAAGATCTGCAT 27372 >seq152 Length=376403 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || ||||| || || || |||| || || | || || || Sbjct 331446 ACCAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCCAGCGTCCGGCCATCCTCC 331505 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || ||||| || |||||||| || | |||||| || ||||| || || || || || ||| Sbjct 331506 AGCTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCTTGA 331565 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || || || || || | ||| ||||| | || || || | |||||||||||| Sbjct 331566 ATCTTGGCCTTCACGTTATCGATGGTGTCGCTGGACTCCACTTCCAACGTAATAGTCTTA 331625 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||||| ||||| || ||||| Sbjct 331626 CCGGTCAAAGTTTTGACAAAAATTTGCAT 331654 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| | ||| || || || || || |||||||||| || || | || || Sbjct 329376 AGCACCAAATGCAGTGTGGACTCCTTTTGGATGTTATAGTCAGCCAGGGTCCGCCCATCC 329435 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | || ||||||||||| || || | ||| || |||||||| || || || ||||| Sbjct 329436 TCCAACTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGGATACCCTCCTTATCT 329495 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || ||||| || | ||| || || | || ||||| || ||||| || Sbjct 329496 TGAATCTTCGCCTTGACATTGTCAATGGTGTCACTTGACTCAACCTCAAGAGTAATGGTT 329555 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || | || || ||||| || ||||| Sbjct 329556 TTCCCTGTCAAAGTCTTGACAAAGATTTGCAT 329587 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| |||||||||||||| || || ||||| || | |||||| || | ||| || Sbjct 330789 ATACCTTCCTTATCCTGAATCTTCGCCTTGACATTGTCAATGGTATCACTTGATTCCACT 330848 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || ||||| || || || | ||| || ||||| |||||||| Sbjct 330849 TCTAAAGTGATAGTTTTCCCTGTCAATGTCTTGACAAAAATCTGCAT 330895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151357816444708