Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq41 91.5 1e-13 seq152 89.7 4e-13 >seq41 Length=668564 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 ||||| | |||||| || ||||| || ||||| || ||||||| || | ||| Sbjct 30009 AACACCAGATGAAGGGTAGATTCCTTCTGGATGTTATAGTCAGCCAGGGTGCGGCCATCC 29950 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 ||||||||||| ||| | | || | |||||||| || ||| | | |||||||||| Sbjct 29949 TCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCC 29890 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 ||| || ||||| | | ||||| ||| | ||||| ||| | || ||||| Sbjct 29889 TGAATCTTTGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCCAGGGTGATGGTC 29830 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || || || || || ||||| ||||||||| Sbjct 29829 TTCCCTGTCAGCGTCTTGACAAAGATCTGCATC 29797 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| ||||| | | |||||||| || || ||| |||||||| |||||||| || Sbjct 25310 CCTCCTCGCAAACGAAGGACTAAATGCAGAGTCGACTCTTTTTGAATATTGTAATCCGCT 25251 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | | || | ||||| || ||||| || | |||| | || ||||| || || Sbjct 25250 AGTGTGCGTCCATCCTCAAGTTGCTTTCCAGCAAAAATGAGGCGTTGCTGGTCTGGAGGA 25191 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | || |||||||| ||| || ||| | | | || ||||| | |||||| Sbjct 25190 ATACCCTCCTTGTCTTGAATCTTGGCCTTCACATTGTCAATTGTATCTGAAGACTCAACT 25131 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTCT 48733 || | || ||||| || || || || ||||||||||| |||||||| ||| || Sbjct 25130 TCCAAAGTGATGGTCTTCCCAGTCAGTGTTTTCACAAAGATCTGCATGGTGGCT 25077 >seq152 Length=376403 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || ||||| | || || | |||||| || |||||| || ||||||||||||||| Sbjct 331428 CCACCACGCAAACGCAAAACCAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCC 331487 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || | ||||||||||| || ||| | |||| | |||||| || || || Sbjct 331488 AGCGTCCGGCCATCCTCCAGCTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCGGGAGGG 331547 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | |||||||| ||| || ||| | | ||||| ||| | |||||| Sbjct 331548 ATGCCCTCCTTGTCTTGAATCTTGGCCTTCACGTTATCGATGGTGTCGCTGGACTCCACT 331607 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || || || |||||||| | |||||| |||||||| ||||| Sbjct 331608 TCCAACGTAATAGTCTTACCGGTCAAAGTTTTGACAAAAATTTGCAT 331654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421237076368751