Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq40 82.4 4e-11 seq2 82.4 4e-11 >seq40 Length=674714 Score = 82.4 bits (90), Expect = 4e-11 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || |||||||| | ||||||| |||||| ||||||||||||| ||||||| ||| Sbjct 226440 AAGTGGCCCATATCGGTCTCGAACCGATGACCTTGGCGTTATTAGCACCACGCTCTAACC 226499 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||||||||| Sbjct 226500 AACTGAGCTAATGGGCC 226516 >seq2 Length=1355118 Score = 82.4 bits (90), Expect = 4e-11 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||| ||||||||||||| ||||||| |||||||||||||||||||| Sbjct 747642 TCGAACCGATGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAATGGGCC 747700 Lambda K H 0.640 0.410 0.922 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261482432772076