Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq41 138 1e-27 seq152 96.9 3e-15 >seq41 Length=668564 Score = 138 bits (152), Expect = 1e-27 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||||||||| || | ||||||||||| || | |||||| || | Sbjct 30024 CCCCCCCTCAGGCGCAACACCAGATGAAGGGTAGATTCCTTCTGGATGTTATAGTCAGCC 29965 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | |||||||||||| || ||| ||||||| | | ||||| ||||| || Sbjct 29964 AGGGTGCGGCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 29905 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGA 94958 || ||||| ||||| | ||| ||||||||||| | ||| ||||| || ||| |||| Sbjct 29904 ATGCCTTCCTTGTCCTGAATCTTTGCCTTGACATTGTCGATGGTGTC-GC-TGGACTCGA 29847 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | |||||||| || || || || || || |||||||||||||| Sbjct 29846 CCTCCAGGGTGATGGTCTTCCCTGTCAGCGTCTTGACAAAGATCTGCAT 29798 Score = 120 bits (132), Expect = 3e-22 Identities = 174/242 (72%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || ||||||| ||| || | || || |||| ||| || || ||||| | Sbjct 25322 AAAATTTGCATGCCTCCTCGCAAACGAAGGACTAAATGCAGAGTCGACTCTTTTTGAATA 25263 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || ||||| | | |||||| | |||||| || || ||||| |||| || | | || Sbjct 25262 TTGTAATC-CGC-TAGTGTGCGTCCATCCTCAAGTTGCTTTCCAGCAAAAATGAGGCGTT 25205 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 |||| |||||||||||||| || ||||| | ||| || ||||| || | | | || | Sbjct 25204 GCTGGTCTGGAGGAATACCCTCCTTGTCTTGAATCTTGGCCTTCACATTGTCAATTGTAT 25145 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | || || || | |||||||| || ||||| || ||||||||||||||||||| Sbjct 25144 CTGAAGACTCAACTTCCAAAGTGATGGTCTTCCCAGTCAGTGTTTTCACAAAGATCTGCA 25085 Query 95007 TG 95008 || Sbjct 25084 TG 25083 Score = 111 bits (122), Expect = 1e-19 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | || |||| ||||| || | || || ||||| || | |||||| || | Sbjct 27370 CCTCCGCGCAGACGCAGCACCAGATGAAGCGTCGACTCCTTCTGGATGTTATAGTCTGCC 27311 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | |||||||||||| || ||| ||||||| | | ||||| ||||| || Sbjct 27310 AGGGTGCGGCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 27251 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGA 94958 || || || ||||| | || |||||||||||| | ||| ||||| || ||| || | Sbjct 27250 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTC-GC-TGGACTCCA 27193 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | |||||||| || || || || || || |||||||| ||||| Sbjct 27192 CTTCCAGGGTGATGGTCTTCCCTGTCAGGGTCTTGACAAAGATTTGCAT 27144 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | || |||| ||||| || | || || ||||| || | |||||| || | Sbjct 28529 CCTCCGCGCAGACGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCTGCC 28470 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | |||||||||||| || || ||||||| | | ||||| ||||| || Sbjct 28469 AGGGTGCGGCCATCCTCCAGCTGCTTCCCCGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 28410 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGAC 94959 || || || ||||| | || |||||||| ||| | ||| ||||| || | ||||| Sbjct 28409 ATGCCCTCCTTGTCCTGGATCTTTGCCTTAACGTTGTCGATGGTGTC-GCTCGACTCGAC 28351 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || ||||| || || || || || || |||||||||||||| Sbjct 28350 CTCCAGGGTAATGGTCTTCCCTGTCAGGGTCTTGACAAAGATCTGCAT 28303 >seq152 Length=376403 Score = 96.9 bits (106), Expect = 3e-15 Identities = 170/244 (70%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || || || | ||| ||||| |||| || | ||| || ||||| || | Sbjct 331415 AAAAATCTGCATGCCACCACGCAAACGCAAAACCAGATGAAGAGTCGACTCCTTCTGGAT 331474 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| ||||| || || | ||||||||||||||| ||| |||| || | | || Sbjct 331475 GTTGTAATCAGCCAGCGTCCGGCCATCCTCCAGCTGTTTGCCGGCAAAAATAAGACGCTG 331534 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 || || ||||| || || || ||||| | ||| || ||||| ||| ||| ||||| Sbjct 331535 TTGGTCGGGAGGGATGCCCTCCTTGTCTTGAATCTTGGCCTTCACGTTATCGATGGTGTC 331594 Query 94948 AGCGTGG--TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || ||| || || || | ||| || || || || || | |||||| ||||| || ||| Sbjct 331595 -GC-TGGACTCCACTTCCAACGTAATAGTCTTACCGGTCAAAGTTTTGACAAAAATTTGC 331652 Query 95006 ATGC 95009 |||| Sbjct 331653 ATGC 331656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448275784386360