Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq53 161 2e-35 seq92 125 1e-24 seq15 96.9 5e-16 >seq53 Length=604443 Score = 161 bits (178), Expect = 2e-35 Identities = 181/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| ||||| || ||||| || |||| |||||||| || || |||||| |||| Sbjct 321417 AGGTATCACAAAGCCTGCCATCCGCCGCTTGGCACGTCGTGGAGGTGTGAAGCGTATCTC 321358 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 || | |||||||||||| ||||| ||| |||||| | ||||| ||| ||| |||| Sbjct 321357 AGGCCTCATCTATGAAGAGACTCGTGGTGTCTTGAAGGTGTTCCTTGAGAACGTCATCCG 321298 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGT 16650 ||||||| || || ||||||||||| || |||||||| || || | ||| | || Sbjct 321297 TGATGCTGTCACATACACCGAGCACGCCCGCCGCAAGACTGTTACGGCCTTTGATGTTGT 321238 Query 16651 CTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATCA 16710 ||| || |||| || |||||||| | ||||||| ||||| ||||| || |||| Sbjct 321237 CTACGCCCTGAAGCGCCAAGGCCGGACCCTTTATGGCTTTGGTGGTTAAGGTTGATATCA 321178 Query 16711 AA 16712 || Sbjct 321177 AA 321176 >seq92 Length=505770 Score = 125 bits (138), Expect = 1e-24 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||||||||| || ||||| || || ||||||||||| |||||||| ||| | || Sbjct 468478 AGGTATCACCAAGCCTGCCATCCGCCGCCTTGCTCGTCGTGGAGGAGTCAAACGTATTTC 468537 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 || | | || || || | ||||| |||| | ||| | ||||| ||| ||| |||| Sbjct 468538 AGGTCTTATATACGAGGAAACTCGTGGTGTTCTCAAGGTGTTCCTTGAGAACGTCATCCG 468597 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGT 16650 ||||| || || ||||||||||| |||||||| ||||| | | || | || Sbjct 468598 CGATGCCGTCACTTACACCGAGCACGCGCGCCGTAAGACAGTCACTGCTTTCGACGTGGT 468657 Query 16651 CTATGCATTGAAACGTCAAGGC 16672 ||| || ||||||||||| ||| Sbjct 468658 CTACGCCTTGAAACGTCAGGGC 468679 >seq15 Length=878884 Score = 96.9 bits (106), Expect = 5e-16 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| || || ||||| || || || || || ||||||||||| || |||||||| | || Sbjct 556335 AGGTATTACAAAGCCTGCCATTCGACGGCTCGCTCGTCGTGGAGGTGTCAAGCGCATATC 556394 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 || ||| ||||||| |||| || | ||| | || ||||||| ||| || || | Sbjct 556395 GGGCTTGATCTATGAGGAGACACGCGGTGTGCTTAAAGTCTTCCTTGAGAATGTCATTCG 556454 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGT 16650 ||||| | ||||| ||||| ||| || ||||| || || | | || |||| Sbjct 556455 CGATGCCGTGACTTATACTGAGCATGCTCGCCGGAAGACCGTGACTGCATTCGACGTCGT 556514 Query 16651 CTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 |||||| | || || || ||| | | | || ||||| ||| ||||| ||| Sbjct 556515 CTATGCCCTCAAGCGCCAGGGCAGGACCCTGTACGGTTTCGGAGGTTAAGCTT 556567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072684741443