Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq61 96.9 9e-15 >seq61 Length=579265 Score = 96.9 bits (106), Expect = 9e-15 Identities = 179/263 (68%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| ||||| | || || | | ||| ||||| |||| || ||| |||| || Sbjct 233725 TTCACACACGCATCCCCCACGCTCTTCAACGCTGGCACTCCCCGCCCGCAGCTGTCCTCC 233784 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 |||||||| | |||||| | || |||||||||||||| ||||| | ||| | Sbjct 233785 TGCTTTCTGATTTGCATGAAGAATGACAGCATCGAGGGTATCTACGACACCTTGAAGGAG 233844 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 ||||| | ||||||||| ||| || || ||||| | || ||||| || | || || Sbjct 233845 TGTGCCGTCATTTCCAAGTCTGCTGGAGGGATTGGGCTTTCCATCCATAACATCCGAGCT 233904 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 | |||||||| || || || || |||| |||||| | ||||| ||||| || Sbjct 233905 GTGGGTAGTTACATCCGGGGAACGAACGGCAACTCCAATGGGATCGTTCCTATGCTGCGC 233964 Query 363787 GTGTTTGACAATACTGCGAGGTA 363809 || || | | || || ||||| Sbjct 233965 GTCTTCAATGACACCGCCAGGTA 233987 Score = 95.1 bits (104), Expect = 3e-14 Identities = 125/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 364141 TCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCC 364200 |||||| | || || |||| || || ||| ||||||| || | ||||||||||||||| Sbjct 235700 TCGCAGGTGGAAACCGGAAACCCGTACATGCTGTACAAGGACACATGCAACCGCAAGTCC 235759 Query 364201 AACCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATA 364259 ||||||||| |||| || || | || || | |||||| || || || || | || || Sbjct 235760 AACCAGCAGAACCTGGGCACCA-TCCGCTGCTCCAACCTGTGCACTGAAATAGTGGAGTA 235818 Query 364260 CACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCC 364310 ||| || | || ||||| || || || ||||| || || || || || || Sbjct 235819 CACGTCTGCGGAGGAGACGGCTGTGTGCAACCTGGCCTCCATTGCACTGCC 235869 Score = 84.2 bits (92), Expect = 6e-11 Identities = 123/173 (71%), Gaps = 6/173 (3%) Strand=Plus/Plus Query 364969 CCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAA---CTCTC 365025 || ||||| |||||| | | ||||| || || |||||||| | || || |||| Sbjct 238780 CCCGAAGAGCTGAAGGCGCTGTACAAGACGGTGTGGGAAATA---AAGCAAAGGGCTCTG 238836 Query 365026 ATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTC 365085 | || |||||||| || ||||| || || ||| ||||||||||| || || || | Sbjct 238837 GTGGACATGGCGGCGGACCGCGGCGCCTTCATCGACCAGAGCCAGTCCTTCAATGTCCAC 238896 Query 365086 ATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAA 365138 ||| | | || | || || |||||| || ||| |||| ||||||| ||||| Sbjct 238897 ATGTCCGACCCCAACTTCGGCAAGCTGACGTCCCTGCACTTCTACGCTTGGAA 238949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303307660451282