Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq152 107 2e-18 seq41 107 2e-18 >seq152 Length=376403 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| || || || || | ||||| | ||||| ||| ||| | Sbjct 331654 ATGCAAATTTTTGTCAAAACTTTGACCGGTAAGACTATTACGTTGGAAGTGGAGTCCAGC 331595 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || |||||| ||||| || ||||| |||||||| ||| Sbjct 331594 GACACCATCGATAACGTGAAGGCCAAGATTCAAGACAAGGAGGGCATCCCTCCCGACCAA 331535 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||| | || |||| | |||||| || || || |||| | | ||| || ||||| || Sbjct 331534 CAGCGTCTTATTTTTGCCGGCAAACAGCTGGAGGATGGCCG-GACGCTGGCTGATTACAA 331476 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||| || || || || || ||||| | || || Sbjct 331475 CATCCAGAAGGAGTCGACTCTTCATCTGGTTTT 331443 >seq41 Length=668564 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || || | || ||| | || |||||| ||| | Sbjct 29798 ATGCAGATCTTTGTCAAGACGCTGACAGGGAAGACCATCACCCTGGAGGTCGAGTCCAGC 29857 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||||| ||||| |||||||| || || || || Sbjct 29858 GACACCATCGACAATGTCAAGGCAAAGATTCAGGACAAGGAAGGCATCCCGCCAGACCAG 29917 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | | ||| ||||| || || |||| | | | | | || |||||| Sbjct 29918 CAGCGCCTGATCTTTGCCGGGAAGCAGCTGGAGGATGGCCGCACCCTGGCTGACTATAAC 29977 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 || || || |||||||| ||||| | ||||| Sbjct 29978 ATCCAGAAGGAATCTACCCTTCATCTGGTGTT 30009 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | || || || | || ||| | ||||| ||| ||| | Sbjct 27144 ATGCAAATCTTTGTCAAGACCCTGACAGGGAAGACCATCACCCTGGAAGTGGAGTCCAGC 27203 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| ||||| || ||||| || || || || Sbjct 27204 GACACCATCGACAACGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCAG 27263 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | | ||| ||||| || || |||| | | | | | || |||||| Sbjct 27264 CAGCGCCTGATCTTTGCCGGGAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTATAAC 27323 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || || || || || ||||| | ||| Sbjct 27324 ATCCAGAAGGAGTCGACGCTTCATCTGGTG 27353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429921585186405