Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq152 107 2e-18 seq41 98.7 8e-16 >seq152 Length=376403 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||||||||| | || || || || ||||| | ||| |||||||||| Sbjct 331654 ATGCAAATTTTTGTCAAAACTTTGACCGGTAAGACTATTACGTTGGAAGTGGAGTCCAGC 331595 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| | | | || || || ||| || || || ||| |||| || || Sbjct 331594 GACACCATCGATAACGTGAAGGCCAAGATTCAAGACAAGGAGGGCATCCCTCCCGACCAA 331535 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | ||||||| ||| |||||||| | || |||| | || |||| ||||| ||| Sbjct 331534 CAGCGTCTTATTTTTGCCGGCAAACAGCTGGAGGATGGCCGGACGCTGGCTGATTACAAC 331475 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || || ||||| ||| | ||| |||| ||| | ||||| || || Sbjct 331474 ATCCAGAAGGAGTCGACTCTTCATCTGGTTTTGCGTTTGCGTGGTGG 331428 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| |||||||| || | || || ||||||||||| | || ||||| || Sbjct 329587 ATGCAAATCTTTGTCAAGACTTTGACAGGGAAAACCATTACTCTTGAGGTTGAGTCAAGT 329528 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| || ||||| || || || ||| ||||| || || |||| ||| || Sbjct 329527 GACACCATT-GACAATGTCAAGGCGAAGATTCAAGATAAGGAGGGTATCCCTCCTGACCA 329469 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | ||||| | ||| || || || || || |||| ||| |||| || ||||| Sbjct 329468 GCAGCGTCTTATCTTTGCTGGAAAGCAGTTGGAGGATGGGCGGACCCTGGCTGACTATAA 329409 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||| ||||| ||||| || | ||| ||||| Sbjct 329408 CATCCAAAAGGAGTCCACACTGCATTTGGTG 329378 >seq41 Length=668564 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| |||||||| || || || || || ||||| ||| | ||| |||||||||| Sbjct 27144 ATGCAAATCTTTGTCAAGACCCTGACAGGGAAGACCATCACCCTGGAAGTGGAGTCCAGC 27203 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | ||||| || || ||| || || || || ||| |||| || || Sbjct 27204 GACAC-CATCGACAACGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCA 27262 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | || || | ||| || || || | || |||| | ||| |||| || ||||| Sbjct 27263 GCAGCGCCTGATCTTTGCCGGGAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTATAA 27322 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||| || || ||||| || | ||| ||||| || | |||| ||||| Sbjct 27323 CATCCAGAAGGAGTCGACGCTTCATCTGGTGCTGCGTCTGCGCGGAGG 27370 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || |||||||| ||||| || || || ||||| ||| | || ||||||||| Sbjct 29798 ATGCAGATCTTTGTCAAGACGCTGACAGGGAAGACCATCACCCTGGAGGTCGAGTCCAGC 29857 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | ||||| || || ||| ||| || || |||||| |||| || || Sbjct 29858 GACAC-CATCGACAATGTCAAGGCAAAGATTCAGGACAAGGAAGGCATCCCGCCAGACCA 29916 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | || || | ||| || || || | || |||| | ||| |||| || ||||| Sbjct 29917 GCAGCGCCTGATCTTTGCCGGGAAGCAGCTGGAGGATGGCCGCACCCTGGCTGACTATAA 29976 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 ||| || || || ||||| | ||| |||||||| Sbjct 29977 CATCCAGAAGGAATCTACCCTTCATCTGGTGTTG 30010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425329739146120