Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq41 125 7e-24 seq152 120 3e-22 seq61 82.4 7e-11 >seq41 Length=668564 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||||| ||||||||| | ||| | |||||||||||| || ||||| || || | Sbjct 28529 CCTCCGCGCAGACGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCTGCC 28470 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || || |||| | ||||||||||| || ||| Sbjct 28469 AGGGTGCGGCCATCCTCCAGCTGCTTCCCCGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 28410 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | || | || ||| | ||||||| Sbjct 28409 ATGCCCTCCTTGTCCTGGATCTTTGCCTTAACGTTGTCGATGGTGTCGCTCGACTCGACC 28350 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| || || || || || || || || |||||||| Sbjct 28349 TCCAGGGTAATGGTCTTCCCTGTCAGGGTCTTGACAAAGATCTGCAT 28303 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||||| ||||||||| | ||| | ||||||||||| || ||||| || || | Sbjct 27370 CCTCCGCGCAGACGCAGCACCAGATGAAGCGTCGACTCCTTCTGGATGTTATAGTCTGCC 27311 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || || |||| | ||||||||||| || ||| Sbjct 27310 AGGGTGCGGCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 27251 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || ||| ||||||| | Sbjct 27250 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCGCTGGACTCCACT 27191 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || || || || ||||| Sbjct 27190 TCCAGGGTGATGGTCTTCCCTGTCAGGGTCTTGACAAAGATTTGCAT 27144 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 |||| ||| | ||| | ||| || ||||| || ||||| || || || |||||| Sbjct 30012 CGCAACACCAGATGAAGGGTAGATTCCTTCTGGATGTTATAGTCAGCCAGGGTGCGGCCA 29953 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| |||||||| || || |||| | ||||||||||| || ||||| ||||| ||| Sbjct 29952 TCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCTTCCTTG 29893 Query 131140 TCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 || ||| | | || ||||| | || | || ||| ||||||||| || | ||| | Sbjct 29892 TC-CTGAATCTTTGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCCAGGGTGAT 29834 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| || || || || || || || || |||||||| Sbjct 29833 GGTCTTCCCTGTCAGCGTCTTGACAAAGATCTGCAT 29798 Score = 104 bits (114), Expect = 2e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || ||||| |||| ||| ||||| | |||||||||||| || |||||||| || Sbjct 25983 GCCTCCACGCAACCGCAACACCAAATGCAAGGTCGACTCCTTCTGGATGTTGTAGTCTGC 25924 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| || ||||||||||| | || | |||||||| |||||||| Sbjct 25923 CAAGGTGCGGCCATCCTCCAGTTGCTTGCCTGCAAAAATGAGGCGCTGCTGATCCGGAGG 25864 Query 131127 GATTCCT 131133 ||| ||| Sbjct 25863 GATGCCT 25857 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||||||| || || | ||||||||||| || || ||||| || | Sbjct 27142 CCACCTCGCAGACGCAGCACCAAGTGGAGTGTCGACTCCTTCTGGATATTGTAGTCTGCC 27083 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| || |||| | ||||||||||| ||||| Sbjct 27082 AGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATCAGCCGCTGCTGGTCGGGAGGA 27023 Query 131128 ATTCCT 131133 || ||| Sbjct 27022 ATACCT 27017 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||||| | ||| | || |||||||| || |||||||| || | Sbjct 28301 CCACCTCGCAGGCGCAGCACCAGATGGAGTGTTGACTCCTTCTGGATGTTGTAGTCTGCC 28242 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| || |||| || ||||||||||| ||||| Sbjct 28241 AGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATCAACCGCTGCTGGTCGGGAGGA 28182 Query 131128 ATTCCT 131133 || ||| Sbjct 28181 ATACCT 28176 Score = 89.7 bits (98), Expect = 5e-13 Identities = 98/128 (77%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GC 131065 |||||| || | |||||||| || || | || |||||||||||||| ||||| || || Sbjct 26689 GCCACCCCGGAGGCGCAGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTGTAGTCAGC 26630 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | | |||||| ||||| | ||||||||| ||| | || | ||||||||||| || | Sbjct 26629 T-AGGGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCTGGTG 26571 Query 131126 GGATTCCT 131133 |||| ||| Sbjct 26570 GGATGCCT 26563 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||||| ||||||||| | ||| | ||||||||||| || || || || || | Sbjct 29796 CCTCCGCGCAGACGCAGCACCAGATGAAGCGTCGACTCCTTCTGGATATTATAGTCTGCC 29737 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || || |||| | ||||||||||| || ||| Sbjct 29736 AGGGTGCGGCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 29677 Query 131128 ATTCCT 131133 || ||| Sbjct 29676 ATGCCT 29671 >seq152 Length=376403 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||||||||| || | ||| | ||||||||||| || ||||||||||| Sbjct 331427 GCCACCACGCAAACGCAAAACCAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGC 331486 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || ||||| ||||| ||||| || | || | |||||| ||||| ||||| Sbjct 331487 CAGCGTCCGGCCATCCTCCAGCTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCGGGAGG 331546 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| || || ||| | | || | || ||| ||||||| | Sbjct 331547 GATGCCCTCCTTGTCTTGAATCTTGGCCTTCACGTTATCGATGGTGTCGCTGGACTCCAC 331606 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | |||| || |||||||| | |||||| || ||||| |||||| Sbjct 331607 TTCCAACGTAATAGTCTTACCGGTCAAAGTTTTGACAAAAATTTGCATG 331655 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || ||||| ||||| | || ||||||||||| ||||| || || | Sbjct 329361 CCACCTCGAAGGCGGAGCACCAAATGCAGTGTGGACTCCTTTTGGATGTTATAGTCAGCC 329420 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| ||| ||||| | |||||| || || |||| | |||||||||||| |||||| Sbjct 329421 AGGGTCCGCCCATCCTCCAACTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGG 329480 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || || ||| ||||| | || | || || | ||||| | Sbjct 329481 ATACCCTCCTTATCTTGAATCTTCGCCTTGACATTGTCAATGGTGTCACTTGACTCAACC 329540 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | |||| |||||| || || | ||| || || || || |||||| Sbjct 329541 TCAAGAGTAATGGTTTTCCCTGTCAAAGTCTTGACAAAGATTTGCATG 329588 >seq61 Length=579265 Score = 82.4 bits (90), Expect = 7e-11 Identities = 118/164 (72%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 145625 GCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGC-GTCGCTGTATTGTACGATCTC 145683 || || || |||| || || || ||||||||||| || | || |||| | || || || Sbjct 235863 GCAATGGAGGCCAGGTTGCACACAGCCGTCTCCTCCGCAGACG-TGTACTCCACTATTTC 235805 Query 145684 GGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCA 145743 | ||||| ||| || |||||| ||||| || ||||| || || | |||||| Sbjct 235804 AGTGCACAGGTTGGAGCAGCGGATGGTGCCCAGGTTCTGCTGGTTGGACTTGCGGTTGCA 235745 Query 145744 CGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 | ||||||||| ||||||||||| || || |||||||||| Sbjct 235744 TGTGTCCTTGTACAGCATGTACGGGTTTCCGGTTTCCACCTGCG 235701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471996568659840