Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq152 127 2e-24 seq41 116 3e-21 >seq152 Length=376403 Score = 127 bits (140), Expect = 2e-24 Identities = 155/206 (75%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || |||||||||||||| | || || | ||||||||||| Sbjct 331654 ATGCAAATTTTTGTCAAAACTTTGACCGGTAAGACTATTACGTTGGAAGTGGAGTCCAGC 331595 Query 25059 GACACTATCGAGTCAC-TGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| | || ||||| | || | ||| ||||| || || || || || |||| Sbjct 331594 GACACCATCGA-TAACGTGAAGGCCAAGATTCAA-GACAAGGAGGGCATCCCTCCCGACC 331537 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||||| ||||||||||||||||||| | || |||| || || ||| ||||||| Sbjct 331536 AACAGCGTCTTATTTTTGCCGGCAAACAGCTGGAGGATGGCCGGACGCTGGCTGATTACA 331477 Query 25177 ATATTCAAAAAGAATCCACGCTACAT 25202 | || || || || || || || ||| Sbjct 331476 ACATCCAGAAGGAGTCGACTCTTCAT 331451 Score = 109 bits (120), Expect = 5e-19 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||||||||| || ||| |||| || | || || ||||| | Sbjct 329587 ATGCAAATCTTTGTCAAGACTTTGACAGGGAAAACCATTACTCTTGAGGTTGAGTCAAGT 329528 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || | || || | ||| || || || || || || |||||| Sbjct 329527 GACACCATTGA--CAATGTCAAGGCGAAGATTCA-AGATAAGGAGGGTATCCCTCCTGAC 329471 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| |||| ||||| || || || || || |||| || || ||| || || Sbjct 329470 CAGCAGCGTCTTATCTTTGCTGGAAAGCAGTTGGAGGATGGGCGGACCCTGGCTGACTAT 329411 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| || ||||| || ||||| ||||| Sbjct 329410 AACATCCAAAAGGAGTCCACACTGCATTTGGTGCT 329376 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 |||||||||||| |||||||| || | ||||| || || ||||| | ||||||| || Sbjct 332561 AGGGATTCCACCGGACCAACAACGCCTGATTTTCGCTGGTAAACAGCTGGAAGATGGCCG 332502 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||| ||| ||||| ||||| || || || || ||||||| ||||| Sbjct 332501 GACCTTGGCCGACTACAACATTCAGAAGGAGTCAACTTTACATTTGGTGCT 332451 >seq41 Length=668564 Score = 116 bits (128), Expect = 3e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || ||||| || || |||| || || ||||||| | ||||| ||||| Sbjct 25081 ACCATGCAGATCTTTGTGAAAACACTGACTGGGAAGACCATCACTTTGGAAGTTGAGTCT 25140 Query 25056 TCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || || ||||| | || | ||| ||||| || || ||||| || || Sbjct 25141 TCAGATACAATTGACAATGTGAAGGCCAAGATTCAA-GACAAGGAGGGTATTCCTCCAGA 25199 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| || || | |||||||| || || ||| | || |||| ||||| | | ||||| Sbjct 25200 CCAGCAACGCCTCATTTTTGCTGGAAAGCAACTTGAGGATGGACGCACACTAGCGGATTA 25259 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||||||||| || || || |||||||| || Sbjct 25260 CAATATTCAAAAAGAGTCGACTCTGCATTTAGTCCT 25295 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| |||| || || ||||||| | ||||||||||| Sbjct 27144 ATGCAAATCTTTGTCAAGACCCTGACAGGGAAGACCATCACCCTGGAAGTGGAGTCCAGC 27203 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| ||| ||| ||||| || || || || || ||||| Sbjct 27204 GACACCATCGACAACGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCAG 27263 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || |||||||| || || | || |||| ||||| ||| || || || Sbjct 27264 CAGCGCCTGATCTTTGCCGGGAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTATAAC 27323 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || ||||| ||| | ||||| Sbjct 27324 ATCCAGAAGGAGTCGACGCTTCATCTGGTGCT 27355 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||| || ||||| ||||| |||||| | ||||| || ||||| || || || |||| || Sbjct 26563 AGGCATCCCACCAGACCAGCAGCGGCTGATTTTCGCTGGCAAGCAGTTGGAGGATGGCCG 26622 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| | | || |||||||||||||| || ||||| || || || ||||| Sbjct 26623 CACCCTAGCTGACTACAATATTCAAAAGGAGTCCACTCTGCACTTGGTGCT 26673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433313471460065